Wall clock time and date at job start Mon Mar 30 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47194 * 269.99886 * 3 2 1 5 5 H 1.48502 * 109.47428 * 30.00000 * 3 2 1 6 6 H 1.48499 * 109.47473 * 149.99923 * 3 2 1 7 7 C 1.37883 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99934 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99745 * 180.02562 * 7 2 1 10 10 H 1.09002 * 110.29597 * 57.84546 * 9 7 2 11 11 C 1.54706 * 110.40196 * 295.64255 * 9 7 2 12 12 C 1.54439 * 101.86893 * 215.33789 * 11 9 7 13 13 C 1.51327 * 105.08240 * 25.73867 * 12 11 9 14 14 N 1.35220 * 141.94694 * 163.01665 * 13 12 11 15 15 H 0.97002 * 126.03021 * 0.02562 * 14 13 12 16 16 N 1.39993 * 107.93557 * 180.02562 * 14 13 12 17 17 C 1.30730 * 108.21708 * 359.97438 * 16 14 13 18 18 C 1.50701 * 125.88386 * 180.02562 * 17 16 14 19 19 F 1.39905 * 109.46869 * 269.97877 * 18 17 16 20 20 F 1.39903 * 109.46917 * 29.97276 * 18 17 16 21 21 F 1.39894 * 109.47530 * 149.97450 * 18 17 16 22 22 C 1.35132 * 110.30504 * 343.02476 * 13 12 11 23 23 H 0.97001 * 120.00348 * 0.02562 * 1 2 3 24 24 H 1.08997 * 111.01302 * 97.18992 * 11 9 7 25 25 H 1.09004 * 110.95713 * 333.45924 * 11 9 7 26 26 H 1.09002 * 110.33753 * 266.80882 * 12 11 9 27 27 H 1.08996 * 110.33751 * 144.67181 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 1 3.8893 -0.6505 0.8661 11 6 4.0514 -0.5657 -1.3065 12 6 5.3178 -1.4107 -1.5658 13 6 5.0544 -2.7348 -0.8823 14 7 5.4841 -4.0163 -0.8419 15 1 6.2056 -4.3931 -1.3695 16 7 4.7039 -4.7032 0.0958 17 6 3.8378 -3.8639 0.6002 18 6 2.8028 -4.1855 1.6473 19 9 1.6221 -4.6026 1.0233 20 9 3.2790 -5.2078 2.4751 21 9 2.5465 -3.0447 2.4154 22 6 4.0375 -2.6134 -0.0007 23 1 -0.4851 0.8400 -0.0004 24 1 4.3069 0.4836 -1.1591 25 1 3.3341 -0.6797 -2.1193 26 1 6.1919 -0.9267 -1.1301 27 1 5.4618 -1.5588 -2.6360 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261075398.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:58 Heat of formation + Delta-G solvation = -87.098318 kcal Electronic energy + Delta-G solvation = -18404.094932 eV Core-core repulsion = 14941.115268 eV Total energy + Delta-G solvation = -3462.979664 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -51.14381 -48.69237 -48.62044 -42.77575 -37.64349 -34.43794 -33.43917 -29.93811 -29.37568 -27.65623 -25.11613 -22.63473 -22.12801 -20.85070 -19.57186 -19.24591 -18.80438 -18.29289 -18.03261 -16.46608 -15.98074 -15.54411 -15.49343 -15.07319 -14.98131 -14.92771 -14.80998 -14.70006 -14.06967 -13.94450 -13.60988 -13.43018 -12.79306 -12.45170 -12.16586 -11.92599 -11.84940 -11.46183 -11.15840 -10.81664 -10.61806 -9.33179 -8.16162 -6.20290 0.43484 1.13559 1.34354 1.42346 1.48170 1.57064 1.86333 2.45540 2.66893 3.05402 3.17778 3.35992 3.61572 3.85109 4.11778 4.33599 4.40391 4.78029 4.82262 5.04648 5.13810 5.21726 5.32383 5.64602 5.74554 6.16203 6.38571 6.43585 6.83945 7.43120 9.01251 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.022904 B = 0.011516 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.174168 B = 2430.820379 C = 3315.410424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.008 3.992 3 Si 0.940 3.060 4 H -0.251 1.251 5 H -0.303 1.303 6 H -0.236 1.236 7 C -0.501 4.501 8 H 0.023 0.977 9 C 0.070 3.930 10 H 0.041 0.959 11 C -0.125 4.125 12 C -0.026 4.026 13 C 0.068 3.932 14 N -0.418 5.418 15 H 0.461 0.539 16 N -0.258 5.258 17 C -0.015 4.015 18 C 0.554 3.446 19 F -0.180 7.180 20 F -0.172 7.172 21 F -0.164 7.164 22 C -0.205 4.205 23 H 0.263 0.737 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.120 0.880 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.581 -3.196 -2.940 15.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.188 4.188 3 Si 0.764 3.236 4 H -0.175 1.175 5 H -0.230 1.230 6 H -0.159 1.159 7 C -0.540 4.540 8 H 0.041 0.959 9 C 0.050 3.950 10 H 0.059 0.941 11 C -0.163 4.163 12 C -0.064 4.064 13 C -0.062 4.062 14 N -0.131 5.131 15 H 0.311 0.689 16 N -0.085 5.085 17 C -0.179 4.179 18 C 0.497 3.503 19 F -0.162 7.162 20 F -0.153 7.153 21 F -0.145 7.145 22 C -0.216 4.216 23 H 0.072 0.928 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.138 0.862 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.834 -4.322 -2.891 15.719 hybrid contribution -0.822 0.857 0.267 1.218 sum 14.011 -3.465 -2.624 14.670 Atomic orbital electron populations 1.70091 1.08592 1.27820 1.53126 1.25923 0.95371 1.03208 0.94266 0.85929 0.79653 0.78122 0.79883 1.17530 1.23017 1.15911 1.21097 0.90695 0.92642 1.49520 0.95853 1.18395 0.93960 0.87277 0.95371 0.94108 1.22817 0.96227 0.99056 0.98240 1.20890 0.99309 0.84832 1.01401 1.22394 0.95650 0.88881 0.99321 1.45495 1.29553 1.05597 1.32415 0.68909 1.77135 1.06669 1.18330 1.06322 1.21522 0.99664 0.94758 1.01953 1.16992 0.79441 0.74081 0.79740 1.93199 1.50020 1.90249 1.82686 1.93176 1.88070 1.60315 1.73787 1.93251 1.94367 1.50646 1.76229 1.21009 1.01974 0.96392 1.02253 0.92842 0.90031 0.91443 0.86208 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.92 13.96 21.45 0.30 -59.62 15 2 C 0.01 0.48 5.46 84.66 0.46 0.94 15 3 Si 0.94 41.58 24.80 68.60 1.70 43.28 15 4 H -0.25 -10.05 7.11 99.48 0.71 -9.34 15 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 15 6 H -0.24 -9.29 6.42 99.48 0.64 -8.66 15 7 C -0.50 -28.11 8.64 25.60 0.22 -27.89 15 8 H 0.02 1.50 8.01 -2.91 -0.02 1.48 15 9 C 0.07 3.07 2.32 -11.49 -0.03 3.05 15 10 H 0.04 1.83 7.08 -2.39 -0.02 1.82 15 11 C -0.13 -4.26 5.12 31.66 0.16 -4.09 15 12 C -0.03 -0.59 6.78 30.54 0.21 -0.39 15 13 C 0.07 2.04 8.07 41.52 0.34 2.38 15 14 N -0.42 -11.16 7.36 -47.46 -0.35 -11.51 15 15 H 0.46 7.53 8.96 -213.39 -1.91 5.62 15 16 N -0.26 -9.15 12.62 -47.25 -0.60 -9.75 15 17 C -0.02 -0.63 6.57 43.19 0.28 -0.35 15 18 C 0.55 23.73 3.55 71.24 0.25 23.98 15 19 F -0.18 -8.26 17.30 44.97 0.78 -7.48 15 20 F -0.17 -6.56 17.25 44.97 0.78 -5.78 15 21 F -0.16 -7.59 16.65 44.97 0.75 -6.84 15 22 C -0.21 -8.37 5.79 -19.90 -0.12 -8.49 15 23 H 0.26 15.45 8.31 -92.71 -0.77 14.68 15 24 H 0.08 2.50 5.96 -2.39 -0.01 2.49 15 25 H 0.07 2.50 7.92 -2.38 -0.02 2.48 15 26 H 0.12 2.03 8.14 -2.39 -0.02 2.01 15 27 H 0.11 1.86 8.14 -2.39 -0.02 1.84 15 Total: -1.00 -71.69 245.38 4.40 -67.30 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -0.74 Total: 1.27 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 1.78 Total: -10.86 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -0.65 Total: -80.88 kcal Atomic # 9 Polarization: -22.41 SS G_CDS: 2.30 Total: -20.10 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 1.70 Total: 43.28 kcal Total: -71.69 4.40 -67.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075398.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.801 kcal (2) G-P(sol) polarization free energy of solvation -71.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds