Wall clock time and date at job start Mon Mar 30 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46813 * 2 1 4 4 C 1.50693 * 109.47319 * 119.99632 * 2 1 3 5 5 H 1.07996 * 120.00059 * 114.48960 * 4 2 1 6 6 C 1.37886 * 120.00079 * 294.49145 * 4 2 1 7 7 N 1.31512 * 120.00076 * 164.72947 * 6 4 2 8 8 Si 1.86797 * 119.99920 * 344.73246 * 6 4 2 9 9 H 1.48492 * 109.47289 * 269.99685 * 8 6 4 10 10 H 1.48505 * 109.47029 * 30.00033 * 8 6 4 11 11 H 1.48506 * 109.46982 * 149.99737 * 8 6 4 12 12 C 1.50696 * 109.47346 * 239.99933 * 2 1 3 13 13 C 1.38231 * 119.98039 * 299.72872 * 12 2 1 14 14 C 1.38438 * 120.03385 * 179.72796 * 13 12 2 15 15 F 1.35105 * 120.00138 * 180.26782 * 14 13 12 16 16 C 1.38451 * 119.99832 * 0.52064 * 14 13 12 17 17 C 1.38369 * 119.96462 * 359.74947 * 16 14 13 18 18 F 1.35101 * 120.02237 * 180.02562 * 17 16 14 19 19 C 1.38283 * 119.98009 * 119.99566 * 12 2 1 20 20 Cl 1.73599 * 120.00201 * 0.02562 * 19 12 2 21 21 H 1.08995 * 109.46577 * 173.78022 * 1 2 3 22 22 H 1.09000 * 109.47229 * 293.78333 * 1 2 3 23 23 H 1.08998 * 109.46629 * 53.78436 * 1 2 3 24 24 H 0.97007 * 119.99743 * 354.90704 * 7 6 4 25 25 H 1.07994 * 119.98155 * 359.97438 * 13 12 2 26 26 H 1.08000 * 120.01821 * 179.77423 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5779 -1.6373 1.1339 6 6 1.7955 -0.1766 2.4796 7 7 1.9571 -0.9188 3.5532 8 14 1.2450 1.6005 2.6469 9 1 2.4364 2.4782 2.7712 10 1 0.4647 1.9922 1.4456 11 1 0.3962 1.7439 3.8570 12 6 2.0324 -0.7104 -1.2304 13 6 1.7029 -2.0354 -1.4459 14 6 2.1591 -2.6875 -2.5787 15 9 1.8322 -3.9810 -2.7914 16 6 2.9548 -2.0156 -3.4910 17 6 3.2893 -0.6908 -3.2724 18 9 4.0652 -0.0339 -4.1621 19 6 2.8274 -0.0379 -2.1404 20 17 3.2469 1.6239 -1.8650 21 1 -0.3632 -1.0216 -0.1113 22 1 -0.3634 0.4144 0.9404 23 1 -0.3632 0.6072 -0.8291 24 1 2.1708 -1.8608 3.4639 25 1 1.0859 -2.5611 -0.7322 26 1 3.3139 -2.5250 -4.3730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261075842.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:47 Heat of formation + Delta-G solvation = -83.652198 kcal Electronic energy + Delta-G solvation = -15521.984396 eV Core-core repulsion = 12455.197791 eV Total energy + Delta-G solvation = -3066.786605 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.89142 -48.83922 -39.00059 -36.15468 -34.63012 -31.87214 -29.86389 -29.13261 -24.91912 -23.40646 -22.57845 -20.07147 -17.81898 -17.38656 -16.86596 -16.47400 -15.89837 -15.56621 -15.19197 -14.34585 -14.23647 -13.54069 -13.13898 -12.93102 -12.44467 -12.28004 -12.01694 -11.83524 -11.32669 -11.05554 -10.86554 -10.57689 -10.50142 -9.87027 -9.66581 -9.04065 -8.55909 -8.42136 -8.29464 -6.54374 -4.20162 1.05090 1.23292 2.34044 3.36345 3.39927 3.53085 3.54563 3.95275 4.42629 4.47408 4.76101 5.10742 5.17689 5.26652 5.72177 5.91171 5.98087 6.19000 6.25518 6.40728 6.55554 6.60233 6.91318 7.00990 7.29423 7.86759 8.26905 8.76198 9.47557 10.83582 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023794 B = 0.009567 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.477483 B = 2925.903098 C = 3738.265731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.036 3.964 3 H 0.051 0.949 4 C -0.596 4.596 5 H 0.061 0.939 6 C 0.039 3.961 7 N -0.901 5.901 8 Si 1.035 2.965 9 H -0.284 1.284 10 H -0.268 1.268 11 H -0.285 1.285 12 C 0.039 3.961 13 C -0.142 4.142 14 C 0.129 3.871 15 F -0.134 7.134 16 C -0.207 4.207 17 C 0.134 3.866 18 F -0.127 7.127 19 C -0.095 4.095 20 Cl -0.047 7.047 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.027 0.973 24 H 0.270 0.730 25 H 0.152 0.848 26 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.304 0.755 -12.359 12.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.017 3.983 3 H 0.069 0.931 4 C -0.633 4.633 5 H 0.079 0.921 6 C -0.167 4.167 7 N -0.534 5.534 8 Si 0.862 3.138 9 H -0.210 1.210 10 H -0.193 1.193 11 H -0.211 1.211 12 C 0.038 3.962 13 C -0.162 4.162 14 C 0.109 3.891 15 F -0.112 7.112 16 C -0.227 4.227 17 C 0.114 3.886 18 F -0.106 7.106 19 C -0.122 4.122 20 Cl -0.018 7.018 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.080 0.920 25 H 0.170 0.830 26 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.601 2.047 -11.252 11.453 hybrid contribution 0.653 -1.315 -1.308 1.966 sum 0.052 0.732 -12.560 12.581 Atomic orbital electron populations 1.22210 0.97279 1.00233 1.00077 1.18507 0.92920 0.96888 0.89949 0.93120 1.21868 1.40726 1.10693 0.90033 0.92103 1.25711 0.93994 1.05232 0.91763 1.70812 1.43510 1.08366 1.30696 0.84226 0.77522 0.75747 0.76263 1.21027 1.19283 1.21063 1.20037 0.89863 0.92448 0.93855 1.21126 1.03445 0.94804 0.96779 1.17373 0.97564 0.78899 0.95256 1.91504 1.90869 1.34068 1.94802 1.20701 1.05239 0.93653 1.03065 1.16911 0.93972 0.90019 0.87729 1.91516 1.72101 1.80617 1.66327 1.20936 1.05713 0.88476 0.97115 1.98346 1.92147 1.15240 1.96036 0.93436 0.92387 0.95354 0.92002 0.83028 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.39 37.16 0.31 -2.53 15 2 C 0.04 0.80 1.93 -92.93 -0.18 0.62 15 3 H 0.05 1.13 4.79 -51.92 -0.25 0.88 15 4 C -0.60 -15.55 8.55 -34.44 -0.29 -15.84 15 5 H 0.06 1.71 7.77 -52.49 -0.41 1.31 15 6 C 0.04 1.06 5.33 -17.82 -0.09 0.96 15 7 N -0.90 -26.47 13.70 55.43 0.76 -25.71 15 8 Si 1.04 23.95 26.17 -169.99 -4.45 19.50 15 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 15 10 H -0.27 -5.59 5.54 56.52 0.31 -5.28 15 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 15 12 C 0.04 0.77 4.75 -104.61 -0.50 0.27 15 13 C -0.14 -2.58 8.55 -39.51 -0.34 -2.92 15 14 C 0.13 2.06 7.30 -39.43 -0.29 1.78 15 15 F -0.13 -2.07 17.27 2.25 0.04 -2.03 15 16 C -0.21 -3.06 10.00 -39.45 -0.39 -3.46 15 17 C 0.13 2.18 7.27 -39.40 -0.29 1.90 15 18 F -0.13 -1.99 16.84 2.25 0.04 -1.95 15 19 C -0.09 -1.73 6.32 -39.43 -0.25 -1.98 15 20 Cl -0.05 -0.83 26.66 -51.86 -1.38 -2.21 15 21 H 0.05 0.91 7.20 -51.93 -0.37 0.53 15 22 H 0.06 1.21 5.06 -51.93 -0.26 0.95 15 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 15 24 H 0.27 7.89 8.73 -40.82 -0.36 7.53 15 25 H 0.15 2.76 7.55 -52.49 -0.40 2.37 15 26 H 0.15 1.77 8.06 -52.49 -0.42 1.35 15 LS Contribution 246.07 15.07 3.71 3.71 Total: -1.00 -27.06 246.07 -5.37 -32.43 By element: Atomic # 1 Polarization: -0.78 SS G_CDS: -1.78 Total: -2.56 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.31 Total: -21.18 kcal Atomic # 7 Polarization: -26.47 SS G_CDS: 0.76 Total: -25.71 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.08 Total: -3.97 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -4.45 Total: 19.50 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.38 Total: -2.21 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.06 -5.37 -32.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075842.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.222 kcal (2) G-P(sol) polarization free energy of solvation -27.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds