Wall clock time and date at job start Mon Mar 30 2020 05:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09009 * 109.46813 * 2 1 4 4 C 1.50693 * 109.47319 * 119.99632 * 2 1 3 5 5 H 1.07996 * 120.00059 * 114.48960 * 4 2 1 6 6 C 1.37886 * 120.00079 * 294.49145 * 4 2 1 7 7 N 1.31512 * 120.00076 * 164.72947 * 6 4 2 8 8 Si 1.86797 * 119.99920 * 344.73246 * 6 4 2 9 9 H 1.48492 * 109.47289 * 269.99685 * 8 6 4 10 10 H 1.48505 * 109.47029 * 30.00033 * 8 6 4 11 11 H 1.48506 * 109.46982 * 149.99737 * 8 6 4 12 12 C 1.50696 * 109.47346 * 239.99933 * 2 1 3 13 13 C 1.38231 * 119.98039 * 299.72872 * 12 2 1 14 14 C 1.38438 * 120.03385 * 179.72796 * 13 12 2 15 15 F 1.35105 * 120.00138 * 180.26782 * 14 13 12 16 16 C 1.38451 * 119.99832 * 0.52064 * 14 13 12 17 17 C 1.38369 * 119.96462 * 359.74947 * 16 14 13 18 18 F 1.35101 * 120.02237 * 180.02562 * 17 16 14 19 19 C 1.38283 * 119.98009 * 119.99566 * 12 2 1 20 20 Cl 1.73599 * 120.00201 * 0.02562 * 19 12 2 21 21 H 1.08995 * 109.46577 * 173.78022 * 1 2 3 22 22 H 1.09000 * 109.47229 * 293.78333 * 1 2 3 23 23 H 1.08998 * 109.46629 * 53.78436 * 1 2 3 24 24 H 0.97007 * 119.99743 * 354.90704 * 7 6 4 25 25 H 1.07994 * 119.98155 * 359.97438 * 13 12 2 26 26 H 1.08000 * 120.01821 * 179.77423 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5779 -1.6373 1.1339 6 6 1.7955 -0.1766 2.4796 7 7 1.9571 -0.9188 3.5532 8 14 1.2450 1.6005 2.6469 9 1 2.4364 2.4782 2.7712 10 1 0.4647 1.9922 1.4456 11 1 0.3962 1.7439 3.8570 12 6 2.0324 -0.7104 -1.2304 13 6 1.7029 -2.0354 -1.4459 14 6 2.1591 -2.6875 -2.5787 15 9 1.8322 -3.9810 -2.7914 16 6 2.9548 -2.0156 -3.4910 17 6 3.2893 -0.6908 -3.2724 18 9 4.0652 -0.0339 -4.1621 19 6 2.8274 -0.0379 -2.1404 20 17 3.2469 1.6239 -1.8650 21 1 -0.3632 -1.0216 -0.1113 22 1 -0.3634 0.4144 0.9404 23 1 -0.3632 0.6072 -0.8291 24 1 2.1708 -1.8608 3.4639 25 1 1.0859 -2.5611 -0.7322 26 1 3.3139 -2.5250 -4.3730 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261075842.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:47 Heat of formation + Delta-G solvation = -97.887273 kcal Electronic energy + Delta-G solvation = -15522.601676 eV Core-core repulsion = 12455.197791 eV Total energy + Delta-G solvation = -3067.403885 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.15504 -50.11075 -40.41439 -37.53781 -36.35464 -33.77795 -31.22028 -30.63096 -26.78073 -24.95688 -23.93705 -21.70611 -19.69752 -18.77278 -18.32055 -17.82364 -17.18045 -16.91147 -16.45364 -16.05907 -15.49141 -15.26494 -14.72077 -14.55368 -13.96359 -13.84347 -13.56269 -13.22614 -13.06513 -12.62031 -12.31092 -12.23753 -12.10356 -11.50495 -11.37651 -10.99622 -10.46061 -9.97391 -9.68894 -8.68972 -6.34685 -0.30709 -0.10827 0.95631 1.51712 1.54350 1.72249 2.16544 2.51781 2.63906 3.07296 3.16785 3.46176 3.75433 3.94103 4.37299 4.46620 4.56823 4.68355 4.83464 4.86903 4.98085 5.04000 5.33503 5.55042 5.63559 5.95431 6.07816 6.58509 7.40422 8.67434 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023794 B = 0.009567 C = 0.007488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.477483 B = 2925.903098 C = 3738.265731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.035 3.965 3 H 0.052 0.948 4 C -0.586 4.586 5 H 0.026 0.974 6 C -0.011 4.011 7 N -0.939 5.939 8 Si 1.067 2.933 9 H -0.278 1.278 10 H -0.231 1.231 11 H -0.288 1.288 12 C 0.015 3.985 13 C -0.151 4.151 14 C 0.135 3.865 15 F -0.128 7.128 16 C -0.183 4.183 17 C 0.138 3.862 18 F -0.120 7.120 19 C -0.103 4.103 20 Cl -0.046 7.046 21 H 0.050 0.950 22 H 0.049 0.951 23 H 0.055 0.945 24 H 0.255 0.745 25 H 0.141 0.859 26 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 1.451 -14.695 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.016 3.984 3 H 0.070 0.930 4 C -0.624 4.624 5 H 0.044 0.956 6 C -0.210 4.210 7 N -0.575 5.575 8 Si 0.888 3.112 9 H -0.204 1.204 10 H -0.154 1.154 11 H -0.214 1.214 12 C 0.014 3.986 13 C -0.171 4.171 14 C 0.116 3.884 15 F -0.106 7.106 16 C -0.202 4.202 17 C 0.118 3.882 18 F -0.098 7.098 19 C -0.131 4.131 20 Cl -0.017 7.017 21 H 0.069 0.931 22 H 0.068 0.932 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.159 0.841 26 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.797 2.738 -13.623 13.918 hybrid contribution 0.777 -1.643 -0.691 1.944 sum -0.020 1.095 -14.314 14.356 Atomic orbital electron populations 1.22140 0.95725 1.01115 1.00759 1.18392 0.94179 0.96550 0.89293 0.92986 1.22017 1.39027 1.09338 0.92035 0.95564 1.26971 0.93940 1.08305 0.91760 1.70936 1.46804 1.07809 1.31926 0.83872 0.77922 0.71756 0.77651 1.20360 1.15365 1.21386 1.19775 0.91783 0.93118 0.93920 1.21065 1.03848 0.94545 0.97594 1.17269 0.97366 0.79052 0.94735 1.91526 1.90798 1.33627 1.94669 1.21002 1.03086 0.92808 1.03316 1.16887 0.93766 0.90388 0.87202 1.91541 1.71817 1.80586 1.65877 1.21012 1.05711 0.88695 0.97680 1.98342 1.92106 1.15146 1.96100 0.93120 0.93184 0.92577 0.93632 0.84105 0.79740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 8.39 71.98 0.60 -4.80 15 2 C 0.03 1.50 1.93 -12.29 -0.02 1.48 15 3 H 0.05 2.24 4.79 -2.38 -0.01 2.22 15 4 C -0.59 -31.10 8.55 25.60 0.22 -30.88 15 5 H 0.03 1.53 7.77 -2.91 -0.02 1.51 15 6 C -0.01 -0.62 5.33 84.66 0.45 -0.17 15 7 N -0.94 -56.99 13.70 21.45 0.29 -56.70 15 8 Si 1.07 47.68 26.17 68.60 1.80 49.47 15 9 H -0.28 -12.06 7.11 99.48 0.71 -11.35 15 10 H -0.23 -8.85 5.54 99.48 0.55 -8.30 15 11 H -0.29 -12.96 7.11 99.48 0.71 -12.25 15 12 C 0.02 0.58 4.75 -19.86 -0.09 0.48 15 13 C -0.15 -5.33 8.55 22.32 0.19 -5.14 15 14 C 0.14 4.01 7.30 22.37 0.16 4.17 15 15 F -0.13 -3.61 17.27 44.97 0.78 -2.84 15 16 C -0.18 -4.72 10.00 22.35 0.22 -4.50 15 17 C 0.14 4.07 7.27 22.39 0.16 4.23 15 18 F -0.12 -3.34 16.84 44.97 0.76 -2.58 15 19 C -0.10 -3.56 6.32 22.37 0.14 -3.42 15 20 Cl -0.05 -1.54 26.66 -2.72 -0.07 -1.62 15 21 H 0.05 1.88 7.20 -2.39 -0.02 1.87 15 22 H 0.05 1.99 5.06 -2.39 -0.01 1.97 15 23 H 0.06 1.84 8.14 -2.39 -0.02 1.82 15 24 H 0.25 15.65 8.73 -92.70 -0.81 14.84 15 25 H 0.14 5.17 7.55 -2.91 -0.02 5.15 15 26 H 0.19 3.44 8.06 -2.91 -0.02 3.41 15 Total: -1.00 -58.53 246.07 6.61 -51.91 By element: Atomic # 1 Polarization: -0.13 SS G_CDS: 1.03 Total: 0.89 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 2.04 Total: -38.55 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: 0.29 Total: -56.70 kcal Atomic # 9 Polarization: -6.95 SS G_CDS: 1.53 Total: -5.42 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.80 Total: 49.47 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.07 Total: -1.62 kcal Total: -58.53 6.61 -51.91 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261075842.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.976 kcal (2) G-P(sol) polarization free energy of solvation -58.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds