Wall clock time and date at job start Mon Mar 30 2020 05:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47001 * 2 1 4 4 C 1.50701 * 109.46958 * 119.99848 * 2 1 3 5 5 H 1.08003 * 119.99916 * 119.99879 * 4 2 1 6 6 C 1.37874 * 120.00166 * 299.99987 * 4 2 1 7 7 N 1.31513 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86801 * 120.00038 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47374 * 89.99667 * 8 6 4 10 10 H 1.48495 * 109.47240 * 209.99880 * 8 6 4 11 11 H 1.48507 * 109.46919 * 329.99796 * 8 6 4 12 12 C 1.50697 * 109.47159 * 239.99738 * 2 1 3 13 13 C 1.38246 * 119.97454 * 300.00382 * 12 2 1 14 14 C 1.38367 * 120.01074 * 180.23586 * 13 12 2 15 15 F 1.35104 * 120.01599 * 179.72436 * 14 13 12 16 16 C 1.38688 * 119.95529 * 359.46073 * 14 13 12 17 17 F 1.35107 * 120.02653 * 180.27957 * 16 14 13 18 18 C 1.38357 * 119.94671 * 0.53771 * 16 14 13 19 19 C 1.38332 * 119.96814 * 119.98045 * 12 2 1 20 20 Cl 1.73601 * 119.97744 * 0.02562 * 19 12 2 21 21 H 1.09000 * 109.47381 * 299.99980 * 1 2 3 22 22 H 1.09004 * 109.46889 * 60.00031 * 1 2 3 23 23 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99947 * 179.97438 * 7 6 4 25 25 H 1.08002 * 119.98964 * 359.94935 * 13 12 2 26 26 H 1.07999 * 120.01087 * 179.72372 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5566 8 14 0.6247 1.2791 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9758 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 6 1.6980 -2.0340 -1.4486 14 6 2.1628 -2.6885 -2.5756 15 9 1.8407 -3.9835 -2.7862 16 6 2.9550 -2.0126 -3.4916 17 9 3.4050 -2.6486 -4.5954 18 6 3.2886 -0.6880 -3.2715 19 6 2.8273 -0.0375 -2.1408 20 17 3.2459 1.6245 -1.8646 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9031 -0.5279 4.4376 25 1 1.0777 -2.5585 -0.7369 26 1 3.9091 -0.1619 -3.9818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261097783.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:51 Heat of formation + Delta-G solvation = -91.265300 kcal Electronic energy + Delta-G solvation = -15483.009519 eV Core-core repulsion = 12415.892785 eV Total energy + Delta-G solvation = -3067.116734 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.55859 -49.63558 -40.47769 -37.45103 -36.31828 -33.73227 -31.66927 -30.27308 -27.09075 -25.04227 -24.03418 -21.81232 -19.07772 -19.05608 -18.12981 -17.98550 -17.40749 -16.84633 -16.05829 -15.95039 -15.36333 -15.25244 -14.97838 -14.63926 -14.35925 -14.07993 -13.81694 -13.09499 -12.91929 -12.76602 -12.29376 -12.15299 -12.06085 -11.70397 -11.28679 -11.09338 -10.71740 -10.04609 -9.52496 -8.27324 -6.32185 -0.28152 -0.10058 0.99907 1.34673 1.41192 1.50347 2.18906 2.34951 2.69813 3.08876 3.20507 3.50987 3.69297 3.92267 4.32597 4.52504 4.58470 4.63664 4.77254 4.81566 4.98604 5.04334 5.23803 5.55909 5.62100 5.66216 6.27418 6.73259 7.32472 8.88661 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.026575 B = 0.008582 C = 0.007171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.373760 B = 3261.865728 C = 3903.668356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.032 3.968 3 H 0.056 0.944 4 C -0.509 4.509 5 H 0.039 0.961 6 C 0.020 3.980 7 N -0.946 5.946 8 Si 0.939 3.061 9 H -0.265 1.265 10 H -0.303 1.303 11 H -0.241 1.241 12 C -0.018 4.018 13 C -0.109 4.109 14 C 0.067 3.933 15 F -0.132 7.132 16 C 0.060 3.940 17 F -0.127 7.127 18 C -0.102 4.102 19 C -0.031 4.031 20 Cl -0.044 7.044 21 H 0.037 0.963 22 H 0.065 0.935 23 H 0.059 0.941 24 H 0.266 0.734 25 H 0.150 0.850 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 2.943 -14.017 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.074 0.926 4 C -0.547 4.547 5 H 0.058 0.942 6 C -0.178 4.178 7 N -0.586 5.586 8 Si 0.767 3.233 9 H -0.191 1.191 10 H -0.231 1.231 11 H -0.165 1.165 12 C -0.019 4.019 13 C -0.128 4.128 14 C 0.047 3.953 15 F -0.111 7.111 16 C 0.040 3.960 17 F -0.105 7.105 18 C -0.121 4.121 19 C -0.058 4.058 20 Cl -0.015 7.015 21 H 0.056 0.944 22 H 0.084 0.916 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.168 0.832 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.850 3.010 -13.873 14.221 hybrid contribution -0.228 0.009 0.589 0.632 sum -1.078 3.019 -13.284 13.665 Atomic orbital electron populations 1.22140 0.96127 1.01893 1.00207 1.18436 0.93819 0.96884 0.89571 0.92592 1.21078 1.31346 1.12502 0.89791 0.94247 1.25746 0.97087 0.99614 0.95346 1.70024 1.47478 1.42396 0.98653 0.85985 0.79369 0.80465 0.77529 1.19060 1.23101 1.16495 1.19890 0.93943 0.93137 0.94919 1.20913 1.01622 0.94373 0.95859 1.17774 1.01177 0.79655 0.96672 1.91502 1.91209 1.33577 1.94803 1.17273 1.01189 0.91743 0.85790 1.91519 1.87501 1.81656 1.49872 1.20957 1.01380 0.91837 0.97935 1.20608 1.01093 0.87809 0.96303 1.98357 1.91961 1.15153 1.96040 0.94439 0.91639 0.92229 0.92510 0.83206 0.79994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.51 8.49 71.98 0.61 -4.90 15 2 C 0.03 1.33 1.97 -12.29 -0.02 1.30 15 3 H 0.06 2.36 5.22 -2.39 -0.01 2.35 15 4 C -0.51 -26.87 8.82 25.60 0.23 -26.64 15 5 H 0.04 2.32 7.84 -2.91 -0.02 2.30 15 6 C 0.02 1.09 5.45 84.65 0.46 1.55 15 7 N -0.95 -56.87 13.96 21.45 0.30 -56.57 15 8 Si 0.94 42.28 24.37 68.60 1.67 43.95 15 9 H -0.26 -11.29 6.87 99.48 0.68 -10.60 15 10 H -0.30 -13.89 7.11 99.48 0.71 -13.18 15 11 H -0.24 -9.91 6.53 99.48 0.65 -9.26 15 12 C -0.02 -0.65 4.74 -19.84 -0.09 -0.74 15 13 C -0.11 -3.79 8.68 22.30 0.19 -3.60 15 14 C 0.07 2.15 7.31 22.41 0.16 2.32 15 15 F -0.13 -4.27 17.18 44.97 0.77 -3.50 15 16 C 0.06 1.73 7.31 22.41 0.16 1.90 15 17 F -0.13 -3.51 17.18 44.97 0.77 -2.74 15 18 C -0.10 -2.67 9.81 22.33 0.22 -2.45 15 19 C -0.03 -0.97 6.31 22.32 0.14 -0.83 15 20 Cl -0.04 -1.31 27.00 -2.72 -0.07 -1.39 15 21 H 0.04 1.47 3.27 -2.39 -0.01 1.46 15 22 H 0.06 2.04 8.14 -2.39 -0.02 2.02 15 23 H 0.06 2.16 7.39 -2.39 -0.02 2.14 15 24 H 0.27 15.07 8.31 -92.71 -0.77 14.30 15 25 H 0.15 5.37 7.57 -2.91 -0.02 5.35 15 26 H 0.18 3.53 8.06 -2.91 -0.02 3.50 15 Total: -1.00 -58.60 244.88 6.65 -51.95 By element: Atomic # 1 Polarization: -0.76 SS G_CDS: 1.14 Total: 0.39 kcal Atomic # 6 Polarization: -34.16 SS G_CDS: 2.06 Total: -32.10 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.30 Total: -56.57 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 1.55 Total: -6.24 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.67 Total: 43.95 kcal Atomic # 17 Polarization: -1.31 SS G_CDS: -0.07 Total: -1.39 kcal Total: -58.60 6.65 -51.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097783.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.316 kcal (2) G-P(sol) polarization free energy of solvation -58.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds