Wall clock time and date at job start Mon Mar 30 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47123 * 2 1 4 4 C 1.50696 * 109.47280 * 240.00280 * 2 1 3 5 5 H 1.08004 * 120.00002 * 240.00276 * 4 2 1 6 6 C 1.37875 * 120.00139 * 59.99774 * 4 2 1 7 7 N 1.31514 * 120.00223 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 120.00129 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46974 * 90.00169 * 8 6 4 10 10 H 1.48493 * 109.47126 * 210.00375 * 8 6 4 11 11 H 1.48498 * 109.46797 * 330.00258 * 8 6 4 12 12 C 1.50699 * 109.46924 * 120.00221 * 2 1 3 13 13 C 1.38245 * 119.97538 * 60.02106 * 12 2 1 14 14 C 1.38365 * 120.01612 * 179.97438 * 13 12 2 15 15 F 1.35098 * 120.02126 * 180.02562 * 14 13 12 16 16 C 1.38694 * 119.95448 * 0.02562 * 14 13 12 17 17 F 1.35096 * 120.02817 * 180.02562 * 16 14 13 18 18 C 1.38356 * 119.94194 * 0.02562 * 16 14 13 19 19 C 1.38325 * 119.96834 * 239.99964 * 12 2 1 20 20 Cl 1.73603 * 119.97914 * 359.74854 * 19 12 2 21 21 H 1.09005 * 109.46981 * 59.99549 * 1 2 3 22 22 H 1.08999 * 109.47287 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46953 * 300.00406 * 1 2 3 24 24 H 0.96997 * 120.00207 * 180.02562 * 7 6 4 25 25 H 1.08000 * 119.98842 * 359.97438 * 13 12 2 26 26 H 1.08002 * 120.00689 * 180.02562 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1202 -4.0080 9 1 1.3428 -2.1616 -4.4120 10 1 2.4867 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7122 12 6 2.0323 -0.7105 1.2304 13 6 1.6983 -2.0341 1.4484 14 6 2.1595 -2.6874 2.5776 15 9 1.8336 -3.9811 2.7905 16 6 2.9565 -2.0132 3.4908 17 9 3.4080 -2.6498 4.5935 18 6 3.2887 -0.6882 3.2713 19 6 2.8275 -0.0376 2.1406 20 17 3.2515 1.6225 1.8613 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 0.7089 1.1614 -3.4844 25 1 1.0773 -2.5584 0.7371 26 1 3.9096 -0.1623 3.9815 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261097784.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:53 Heat of formation + Delta-G solvation = -85.282388 kcal Electronic energy + Delta-G solvation = -15432.300167 eV Core-core repulsion = 12365.442871 eV Total energy + Delta-G solvation = -3066.857296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.20608 -48.28427 -38.94751 -36.00612 -34.45639 -31.54426 -30.18911 -28.21117 -25.25239 -23.46710 -22.46055 -20.17077 -17.70634 -17.18298 -16.67673 -16.13480 -15.95938 -14.92258 -14.71542 -14.43887 -13.92443 -13.67987 -13.30122 -13.02140 -12.55070 -12.11775 -11.59930 -11.28476 -11.07338 -10.99966 -10.71459 -10.62244 -10.39119 -10.16434 -9.68726 -9.12517 -8.62128 -8.45865 -8.02152 -6.11768 -4.19734 1.15101 1.31096 2.44535 3.24687 3.32207 3.35316 3.65326 4.08393 4.35080 4.57859 4.91020 5.18717 5.25242 5.30155 5.83043 5.93867 6.16907 6.41327 6.49869 6.75817 6.87972 7.02082 7.11353 7.57364 7.77582 7.94328 8.20972 8.81465 9.45531 10.93881 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.023579 B = 0.008352 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.207305 B = 3351.513443 C = 4019.199786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.062 3.938 3 H 0.060 0.940 4 C -0.514 4.514 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C -0.001 4.001 13 C -0.108 4.108 14 C 0.068 3.932 15 F -0.133 7.133 16 C 0.046 3.954 17 F -0.134 7.134 18 C -0.121 4.121 19 C -0.031 4.031 20 Cl -0.050 7.050 21 H 0.091 0.909 22 H 0.030 0.970 23 H 0.012 0.988 24 H 0.263 0.737 25 H 0.156 0.844 26 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 -1.849 8.933 9.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.078 0.922 4 C -0.552 4.552 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C -0.002 4.002 13 C -0.127 4.127 14 C 0.048 3.952 15 F -0.112 7.112 16 C 0.026 3.974 17 F -0.113 7.113 18 C -0.141 4.141 19 C -0.059 4.059 20 Cl -0.021 7.021 21 H 0.109 0.891 22 H 0.049 0.951 23 H 0.031 0.969 24 H 0.073 0.927 25 H 0.173 0.827 26 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.152 -1.649 8.817 9.224 hybrid contribution 0.441 -0.720 -0.597 1.034 sum 2.594 -2.369 8.220 8.939 Atomic orbital electron populations 1.21820 0.96943 0.99551 1.00854 1.18171 0.93348 0.96838 0.87220 0.92248 1.21012 1.31973 1.12650 0.89581 0.92322 1.24911 0.94839 0.94876 0.98921 1.69869 1.36194 1.22544 1.23697 0.86559 0.79376 0.79420 0.82518 1.20559 1.21112 1.19814 1.20616 0.91224 0.92563 0.95808 1.21027 1.01404 0.94790 0.95496 1.17812 1.00953 0.79669 0.96783 1.91489 1.91115 1.33740 1.94835 1.17228 1.02312 0.91596 0.86272 1.91481 1.87713 1.81682 1.50441 1.20731 1.02476 0.92393 0.98501 1.20613 1.01618 0.87522 0.96101 1.98354 1.91894 1.15914 1.95955 0.89085 0.95129 0.96934 0.92733 0.82683 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.78 37.16 0.33 -2.66 15 2 C 0.06 1.44 2.37 -92.93 -0.22 1.22 15 3 H 0.06 1.45 6.16 -51.93 -0.32 1.13 15 4 C -0.51 -13.07 8.24 -34.44 -0.28 -13.36 15 5 H 0.06 1.49 7.60 -52.48 -0.40 1.09 15 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -23.77 11.32 55.43 0.63 -23.15 15 8 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 15 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 10 H -0.29 -6.50 7.11 56.52 0.40 -6.09 15 11 H -0.27 -6.21 7.11 56.52 0.40 -5.80 15 12 C 0.00 -0.02 4.74 -104.59 -0.50 -0.52 15 13 C -0.11 -1.99 8.68 -39.53 -0.34 -2.34 15 14 C 0.07 1.17 7.31 -39.37 -0.29 0.89 15 15 F -0.13 -2.27 17.18 2.25 0.04 -2.23 15 16 C 0.05 0.76 7.31 -39.37 -0.29 0.47 15 17 F -0.13 -2.14 17.18 2.25 0.04 -2.10 15 18 C -0.12 -1.89 9.81 -39.49 -0.39 -2.28 15 19 C -0.03 -0.56 6.31 -39.50 -0.25 -0.81 15 20 Cl -0.05 -0.86 27.00 -51.86 -1.40 -2.26 15 21 H 0.09 2.25 6.07 -51.93 -0.32 1.93 15 22 H 0.03 0.64 7.39 -51.93 -0.38 0.25 15 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 15 24 H 0.26 6.76 8.31 -40.82 -0.34 6.43 15 25 H 0.16 2.82 7.57 -52.49 -0.40 2.42 15 26 H 0.15 1.87 8.06 -52.49 -0.42 1.45 15 LS Contribution 251.70 15.07 3.79 3.79 Total: -1.00 -25.64 251.70 -6.04 -31.68 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: -1.80 Total: -3.29 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -2.32 Total: -17.75 kcal Atomic # 7 Polarization: -23.77 SS G_CDS: 0.63 Total: -23.15 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.08 Total: -4.34 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.40 Total: -2.26 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -25.64 -6.04 -31.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261097784.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.604 kcal (2) G-P(sol) polarization free energy of solvation -25.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds