Wall clock time and date at job start Mon Mar 30 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47460 * 2 1 4 4 C 1.50702 * 109.47034 * 119.99505 * 2 1 3 5 5 H 1.08001 * 119.99676 * 120.00130 * 4 2 1 6 6 C 1.37878 * 120.00413 * 300.00481 * 4 2 1 7 7 N 1.31520 * 119.99500 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00296 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47245 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47548 * 119.99764 * 8 6 4 11 11 H 1.48502 * 109.47193 * 240.00152 * 8 6 4 12 12 C 1.50701 * 109.47563 * 239.99880 * 2 1 3 13 13 C 1.38419 * 120.01216 * 119.99795 * 12 2 1 14 14 F 1.35104 * 120.00865 * 0.02977 * 13 12 2 15 15 C 1.38458 * 119.98806 * 180.29675 * 13 12 2 16 16 C 1.38329 * 120.00625 * 359.45451 * 15 13 12 17 17 Cl 1.73602 * 119.98314 * 180.29698 * 16 15 13 18 18 C 1.38325 * 120.02675 * 0.54620 * 16 15 13 19 19 C 1.38426 * 120.01028 * 300.02243 * 12 2 1 20 20 F 1.35106 * 120.00503 * 359.97438 * 19 12 2 21 21 H 1.08999 * 109.47205 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47602 * 300.00402 * 1 2 3 23 23 H 1.09010 * 109.46722 * 60.00139 * 1 2 3 24 24 H 0.96998 * 119.99350 * 180.02562 * 7 6 4 25 25 H 1.07995 * 119.99162 * 179.72116 * 15 13 12 26 26 H 1.08002 * 119.99652 * 179.70172 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 3.1454 -2.2875 3.6040 10 1 3.1464 -0.1872 4.8166 11 1 1.1659 -1.5865 4.8161 12 6 2.0324 -0.7104 -1.2304 13 6 2.8282 -0.0379 -2.1417 14 9 3.1553 1.2554 -1.9281 15 6 3.2845 -0.6893 -3.2751 16 6 2.9545 -2.0152 -3.4910 17 17 3.5333 -2.8336 -4.9085 18 6 2.1592 -2.6877 -2.5807 19 6 1.6978 -2.0356 -1.4499 20 9 0.9211 -2.6925 -0.5608 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 0.7093 1.1619 3.4844 25 1 3.9017 -0.1634 -3.9884 26 1 1.8979 -3.7215 -2.7522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261100372.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:17 Heat of formation + Delta-G solvation = -82.884365 kcal Electronic energy + Delta-G solvation = -15657.581431 eV Core-core repulsion = 12590.828121 eV Total energy + Delta-G solvation = -3066.753310 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.51406 -48.32404 -38.66959 -36.48271 -34.47700 -31.53340 -30.09506 -28.37280 -25.22489 -23.09622 -22.53027 -20.16932 -17.79777 -17.21459 -16.21958 -15.58506 -15.36479 -15.18165 -14.74139 -14.68649 -14.26196 -13.30736 -12.91575 -12.84265 -12.50282 -12.05366 -11.66832 -11.45855 -11.11196 -11.03808 -10.93828 -10.66313 -10.37813 -10.15342 -9.68507 -9.14202 -8.48865 -8.44229 -8.07885 -6.07894 -4.15263 1.24301 1.26515 2.04261 3.26901 3.34778 3.39199 3.63361 4.38552 4.47706 4.68055 5.07056 5.08108 5.25423 5.38434 5.62555 6.08946 6.20104 6.34532 6.37651 6.76864 6.92514 7.04263 7.17037 7.57406 7.79179 7.97263 8.23339 8.84404 9.49451 10.98218 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.032283 B = 0.007261 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.108819 B = 3855.144770 C = 4146.171294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.049 0.951 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.097 4.097 13 C 0.128 3.872 14 F -0.124 7.124 15 C -0.162 4.162 16 C -0.005 4.005 17 Cl -0.066 7.066 18 C -0.165 4.165 19 C 0.149 3.851 20 F -0.111 7.111 21 H 0.038 0.962 22 H 0.091 0.909 23 H 0.009 0.991 24 H 0.262 0.738 25 H 0.143 0.857 26 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -4.642 -11.163 12.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.053 3.947 3 H 0.067 0.933 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.099 4.099 13 C 0.108 3.892 14 F -0.102 7.102 15 C -0.181 4.181 16 C -0.032 4.032 17 Cl -0.037 7.037 18 C -0.184 4.184 19 C 0.129 3.871 20 F -0.089 7.089 21 H 0.057 0.943 22 H 0.110 0.890 23 H 0.028 0.972 24 H 0.072 0.928 25 H 0.161 0.839 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.560 -4.575 -11.103 12.278 hybrid contribution 0.339 -0.408 0.889 1.035 sum 2.899 -4.983 -10.214 11.728 Atomic orbital electron populations 1.21857 0.96797 1.00280 1.00703 1.17917 0.93538 0.96094 0.87159 0.93313 1.20983 1.31641 1.12421 0.89546 0.92436 1.24908 0.94865 0.94918 0.98963 1.69889 1.36411 1.22713 1.23552 0.86463 0.78702 0.79702 0.82771 1.19675 1.20926 1.20861 1.21003 0.96552 0.93668 0.98710 1.16988 0.98255 0.79584 0.94368 1.91512 1.90660 1.33453 1.94624 1.20834 1.04715 0.93898 0.98697 1.19917 1.00472 0.92414 0.90413 1.98352 1.87729 1.78885 1.38763 1.20923 1.01629 1.01579 0.94318 1.16902 0.93008 0.89713 0.87442 1.91550 1.71209 1.79897 1.66231 0.94284 0.89029 0.97202 0.92821 0.83910 0.83878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.76 37.16 0.33 -3.00 15 2 C 0.07 1.77 2.37 -92.92 -0.22 1.55 15 3 H 0.05 1.31 7.13 -51.93 -0.37 0.94 15 4 C -0.51 -13.71 7.59 -34.44 -0.26 -13.97 15 5 H 0.06 1.56 7.60 -52.49 -0.40 1.16 15 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 15 7 N -0.89 -24.90 11.32 55.43 0.63 -24.27 15 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 15 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 15 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 15 12 C -0.10 -2.05 4.75 -104.49 -0.50 -2.55 15 13 C 0.13 2.39 7.24 -39.43 -0.29 2.11 15 14 F -0.12 -2.42 16.19 2.25 0.04 -2.38 15 15 C -0.16 -2.48 9.81 -39.47 -0.39 -2.87 15 16 C -0.01 -0.08 6.32 -39.52 -0.25 -0.33 15 17 Cl -0.07 -0.81 28.95 -51.86 -1.50 -2.31 15 18 C -0.16 -2.59 9.81 -39.47 -0.39 -2.97 15 19 C 0.15 2.88 6.69 -39.43 -0.26 2.62 15 20 F -0.11 -2.31 14.38 2.25 0.03 -2.27 15 21 H 0.04 0.91 6.31 -51.93 -0.33 0.58 15 22 H 0.09 2.40 6.07 -51.93 -0.32 2.09 15 23 H 0.01 0.20 8.14 -51.92 -0.42 -0.23 15 24 H 0.26 6.98 8.31 -40.82 -0.34 6.64 15 25 H 0.14 1.82 8.06 -52.49 -0.42 1.40 15 26 H 0.14 1.89 8.06 -52.49 -0.42 1.47 15 LS Contribution 250.01 15.07 3.77 3.77 Total: -1.00 -27.27 250.01 -6.19 -33.46 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: -1.81 Total: -4.40 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -2.32 Total: -17.74 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.63 Total: -24.27 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.07 Total: -4.66 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.27 -6.19 -33.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100372.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.421 kcal (2) G-P(sol) polarization free energy of solvation -27.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds