Wall clock time and date at job start Mon Mar 30 2020 05:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47460 * 2 1 4 4 C 1.50702 * 109.47034 * 119.99505 * 2 1 3 5 5 H 1.08001 * 119.99676 * 120.00130 * 4 2 1 6 6 C 1.37878 * 120.00413 * 300.00481 * 4 2 1 7 7 N 1.31520 * 119.99500 * 359.97438 * 6 4 2 8 8 Si 1.86791 * 120.00296 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47245 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47548 * 119.99764 * 8 6 4 11 11 H 1.48502 * 109.47193 * 240.00152 * 8 6 4 12 12 C 1.50701 * 109.47563 * 239.99880 * 2 1 3 13 13 C 1.38419 * 120.01216 * 119.99795 * 12 2 1 14 14 F 1.35104 * 120.00865 * 0.02977 * 13 12 2 15 15 C 1.38458 * 119.98806 * 180.29675 * 13 12 2 16 16 C 1.38329 * 120.00625 * 359.45451 * 15 13 12 17 17 Cl 1.73602 * 119.98314 * 180.29698 * 16 15 13 18 18 C 1.38325 * 120.02675 * 0.54620 * 16 15 13 19 19 C 1.38426 * 120.01028 * 300.02243 * 12 2 1 20 20 F 1.35106 * 120.00503 * 359.97438 * 19 12 2 21 21 H 1.08999 * 109.47205 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47602 * 300.00402 * 1 2 3 23 23 H 1.09010 * 109.46722 * 60.00139 * 1 2 3 24 24 H 0.96998 * 119.99350 * 180.02562 * 7 6 4 25 25 H 1.07995 * 119.99162 * 179.72116 * 15 13 12 26 26 H 1.08002 * 119.99652 * 179.70172 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8303 2.6034 8 14 2.3212 -1.1201 4.0080 9 1 3.1454 -2.2875 3.6040 10 1 3.1464 -0.1872 4.8166 11 1 1.1659 -1.5865 4.8161 12 6 2.0324 -0.7104 -1.2304 13 6 2.8282 -0.0379 -2.1417 14 9 3.1553 1.2554 -1.9281 15 6 3.2845 -0.6893 -3.2751 16 6 2.9545 -2.0152 -3.4910 17 17 3.5333 -2.8336 -4.9085 18 6 2.1592 -2.6877 -2.5807 19 6 1.6978 -2.0356 -1.4499 20 9 0.9211 -2.6925 -0.5608 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 0.7093 1.1619 3.4844 25 1 3.9017 -0.1634 -3.9884 26 1 1.8979 -3.7215 -2.7522 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261100372.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:17 Heat of formation + Delta-G solvation = -96.466912 kcal Electronic energy + Delta-G solvation = -15658.170414 eV Core-core repulsion = 12590.828121 eV Total energy + Delta-G solvation = -3067.342293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.99147 -49.85006 -40.04592 -37.68016 -36.27817 -33.40433 -31.43512 -30.01180 -27.28948 -24.66885 -23.92415 -21.90453 -19.21714 -18.88381 -17.95659 -17.12141 -16.89997 -16.64897 -16.43232 -16.21718 -15.71265 -15.01488 -14.62199 -14.05778 -14.00474 -13.77411 -13.40799 -13.07360 -12.86829 -12.83005 -12.32837 -12.19665 -12.10358 -11.90602 -11.50551 -11.09417 -10.51523 -9.83526 -9.56436 -8.14550 -6.28651 -0.12322 -0.09564 0.85934 1.39148 1.41058 1.52401 2.23515 2.42417 3.06624 3.14352 3.33037 3.76834 3.83408 3.91832 4.26841 4.69637 4.80394 4.81049 4.94034 4.97301 5.07950 5.13598 5.51233 5.64315 5.78775 5.95674 6.21448 6.76362 7.38828 8.90885 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.032283 B = 0.007261 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.108819 B = 3855.144770 C = 4146.171294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.071 3.929 3 H 0.016 0.984 4 C -0.519 4.519 5 H 0.050 0.950 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.279 1.279 11 H -0.278 1.278 12 C -0.130 4.130 13 C 0.114 3.886 14 F -0.135 7.135 15 C -0.142 4.142 16 C 0.004 3.996 17 Cl -0.031 7.031 18 C -0.146 4.146 19 C 0.131 3.869 20 F -0.127 7.127 21 H 0.039 0.961 22 H 0.064 0.936 23 H 0.025 0.975 24 H 0.263 0.737 25 H 0.175 0.825 26 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -6.178 -12.830 14.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.052 3.948 3 H 0.034 0.966 4 C -0.557 4.557 5 H 0.068 0.932 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.203 1.203 12 C -0.131 4.131 13 C 0.094 3.906 14 F -0.114 7.114 15 C -0.161 4.161 16 C -0.023 4.023 17 Cl -0.002 7.002 18 C -0.166 4.166 19 C 0.111 3.889 20 F -0.105 7.105 21 H 0.058 0.942 22 H 0.083 0.917 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.192 0.808 26 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.581 -6.116 -12.784 14.617 hybrid contribution 0.071 0.034 1.249 1.252 sum 3.652 -6.082 -11.535 13.542 Atomic orbital electron populations 1.21691 0.96754 1.00056 1.00105 1.17676 0.93732 0.94609 0.88745 0.96560 1.21229 1.31430 1.12211 0.90864 0.93175 1.25681 0.95140 0.95643 1.01774 1.70009 1.37357 1.23877 1.24160 0.85530 0.78276 0.78699 0.79364 1.19275 1.20437 1.20340 1.20741 0.99102 0.94832 0.98464 1.17161 0.98757 0.79355 0.95335 1.91480 1.90801 1.34249 1.94845 1.21085 1.03486 0.94070 0.97462 1.20034 0.99062 0.92198 0.90992 1.98377 1.87147 1.78118 1.36560 1.21145 1.00208 1.02621 0.92600 1.17082 0.93898 0.89328 0.88595 1.91501 1.71853 1.80034 1.67111 0.94163 0.91690 0.95572 0.92738 0.80767 0.80976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.36 8.76 71.98 0.63 -5.73 15 2 C 0.07 3.63 2.37 -12.29 -0.03 3.61 15 3 H 0.02 0.92 7.13 -2.39 -0.02 0.90 15 4 C -0.52 -28.77 7.59 25.60 0.19 -28.57 15 5 H 0.05 2.78 7.60 -2.91 -0.02 2.75 15 6 C 0.02 0.92 5.30 84.65 0.45 1.37 15 7 N -0.91 -52.80 11.32 21.45 0.24 -52.56 15 8 Si 0.96 43.91 29.54 68.60 2.03 45.94 15 9 H -0.27 -12.04 7.11 99.48 0.71 -11.34 15 10 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 11 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 12 C -0.13 -5.49 4.75 -19.78 -0.09 -5.59 15 13 C 0.11 4.18 7.24 22.37 0.16 4.34 15 14 F -0.14 -5.32 16.19 44.97 0.73 -4.59 15 15 C -0.14 -3.94 9.81 22.34 0.22 -3.72 15 16 C 0.00 0.11 6.32 22.31 0.14 0.25 15 17 Cl -0.03 -0.63 28.95 -2.72 -0.08 -0.71 15 18 C -0.15 -4.18 9.81 22.34 0.22 -3.96 15 19 C 0.13 4.94 6.69 22.36 0.15 5.09 15 20 F -0.13 -5.27 14.38 44.97 0.65 -4.63 15 21 H 0.04 1.92 6.31 -2.39 -0.02 1.91 15 22 H 0.06 3.54 6.07 -2.39 -0.01 3.53 15 23 H 0.03 1.14 8.14 -2.38 -0.02 1.12 15 24 H 0.26 14.37 8.31 -92.71 -0.77 13.60 15 25 H 0.17 3.72 8.06 -2.91 -0.02 3.69 15 26 H 0.17 3.87 8.06 -2.91 -0.02 3.85 15 Total: -1.00 -59.80 250.01 6.82 -52.97 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: 1.22 Total: -3.52 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 2.04 Total: -32.90 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.24 Total: -52.56 kcal Atomic # 9 Polarization: -10.59 SS G_CDS: 1.37 Total: -9.22 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -59.80 6.82 -52.97 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100372.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.493 kcal (2) G-P(sol) polarization free energy of solvation -59.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds