Wall clock time and date at job start Mon Mar 30 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47782 * 2 1 4 4 C 1.50706 * 109.47223 * 240.00068 * 2 1 3 5 5 H 1.08008 * 120.00044 * 245.38567 * 4 2 1 6 6 C 1.37876 * 119.99818 * 65.37398 * 4 2 1 7 7 N 1.31521 * 119.99627 * 185.17718 * 6 4 2 8 8 Si 1.86792 * 120.00151 * 5.18600 * 6 4 2 9 9 H 1.48495 * 109.47374 * 269.99710 * 8 6 4 10 10 H 1.48509 * 109.47074 * 29.99651 * 8 6 4 11 11 H 1.48503 * 109.47513 * 149.99401 * 8 6 4 12 12 C 1.50708 * 109.47442 * 120.00184 * 2 1 3 13 13 C 1.38421 * 120.00880 * 59.72355 * 12 2 1 14 14 F 1.35096 * 120.01163 * 0.02562 * 13 12 2 15 15 C 1.38457 * 119.98730 * 179.74950 * 13 12 2 16 16 C 1.38324 * 120.00595 * 0.50383 * 15 13 12 17 17 Cl 1.73602 * 119.98526 * 179.74895 * 16 15 13 18 18 C 1.38327 * 120.02993 * 359.77051 * 16 15 13 19 19 C 1.38423 * 120.00966 * 239.99949 * 12 2 1 20 20 F 1.35092 * 120.00931 * 0.02562 * 19 12 2 21 21 H 1.08995 * 109.46839 * 54.88943 * 1 2 3 22 22 H 1.09001 * 109.47403 * 174.89179 * 1 2 3 23 23 H 1.08999 * 109.46930 * 294.88522 * 1 2 3 24 24 H 0.96998 * 120.00144 * 355.00755 * 7 6 4 25 25 H 1.07999 * 119.99598 * 180.27344 * 15 13 12 26 26 H 1.07998 * 119.99835 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6365 -1.1338 6 6 1.7930 -0.1783 -2.4797 7 7 2.1411 -0.8474 -3.5572 8 14 0.9747 1.4930 -2.6418 9 1 -0.4985 1.3186 -2.7072 10 1 1.3223 2.3306 -1.4658 11 1 1.4498 2.1588 -3.8814 12 6 2.0324 -0.7105 1.2305 13 6 1.6934 -2.0340 1.4526 14 9 0.9126 -2.6895 0.5662 15 6 2.1595 -2.6879 2.5805 16 6 2.9552 -2.0155 3.4906 17 17 3.5339 -2.8339 4.9080 18 6 3.2895 -0.6911 3.2720 19 6 2.8283 -0.0380 2.1418 20 9 3.1544 1.2556 1.9286 21 1 -0.3633 0.5910 -0.8406 22 1 -0.3634 -1.0236 -0.0915 23 1 -0.3633 0.4324 0.9323 24 1 2.6306 -1.6806 -3.4736 25 1 1.8988 -3.7218 2.7517 26 1 3.9105 -0.1666 3.9831 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261100373.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:19 Heat of formation + Delta-G solvation = -82.367873 kcal Electronic energy + Delta-G solvation = -15713.918217 eV Core-core repulsion = 12647.187304 eV Total energy + Delta-G solvation = -3066.730913 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.65999 -48.43325 -38.79624 -36.58104 -34.64186 -31.80082 -30.20339 -28.91805 -24.84366 -23.14200 -22.67774 -20.00853 -17.90050 -17.82994 -16.79578 -15.72154 -15.60839 -15.32479 -14.82870 -14.59841 -14.15052 -13.41595 -13.04728 -12.93783 -12.75708 -12.32108 -12.10342 -11.74503 -11.44343 -11.11334 -10.81412 -10.71906 -10.53115 -9.82664 -9.77643 -8.86074 -8.59285 -8.50767 -8.25215 -6.48348 -4.15955 1.12889 1.15317 1.95899 3.34200 3.41417 3.51271 3.55789 4.34875 4.43718 4.57376 4.94292 4.98908 5.18794 5.27192 5.50642 5.99132 6.00516 6.12616 6.22491 6.33038 6.47728 6.59997 6.88679 7.00008 7.30525 7.86983 8.30645 8.79795 9.53655 10.91104 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.035732 B = 0.007556 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.412664 B = 3704.820696 C = 4067.818839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.038 3.962 3 H 0.049 0.951 4 C -0.585 4.585 5 H 0.059 0.941 6 C 0.032 3.968 7 N -0.908 5.908 8 Si 1.053 2.947 9 H -0.282 1.282 10 H -0.277 1.277 11 H -0.289 1.289 12 C -0.092 4.092 13 C 0.151 3.849 14 F -0.110 7.110 15 C -0.163 4.163 16 C -0.003 4.003 17 Cl -0.063 7.063 18 C -0.160 4.160 19 C 0.128 3.872 20 F -0.125 7.125 21 H 0.050 0.950 22 H 0.060 0.940 23 H 0.028 0.972 24 H 0.268 0.732 25 H 0.145 0.855 26 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 -0.862 14.507 14.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 H 0.067 0.933 4 C -0.622 4.622 5 H 0.077 0.923 6 C -0.173 4.173 7 N -0.542 5.542 8 Si 0.883 3.117 9 H -0.209 1.209 10 H -0.203 1.203 11 H -0.215 1.215 12 C -0.094 4.094 13 C 0.131 3.869 14 F -0.088 7.088 15 C -0.183 4.183 16 C -0.030 4.030 17 Cl -0.034 7.034 18 C -0.180 4.180 19 C 0.108 3.892 20 F -0.103 7.103 21 H 0.069 0.931 22 H 0.079 0.921 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.163 0.837 26 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.403 0.166 13.467 13.474 hybrid contribution 0.667 -1.195 1.047 1.723 sum 0.263 -1.029 14.515 14.553 Atomic orbital electron populations 1.22192 0.97595 1.01961 0.98927 1.18389 0.92796 0.96786 0.90136 0.93315 1.21897 1.40134 1.09996 0.90216 0.92298 1.25750 0.96315 1.03440 0.91745 1.70808 1.36464 1.16768 1.30176 0.83877 0.76386 0.75672 0.75804 1.20908 1.20334 1.21537 1.20603 0.97269 0.93742 0.97776 1.16887 0.92877 0.89617 0.87494 1.91560 1.70907 1.79965 1.66375 1.20940 1.01480 1.01603 0.94271 1.19941 1.00182 0.92416 0.90460 1.98358 1.87690 1.78829 1.38534 1.20833 1.04521 0.93929 0.98717 1.16957 0.98314 0.79522 0.94397 1.91504 1.90728 1.33420 1.94641 0.93133 0.92084 0.95275 0.92165 0.83725 0.83736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.49 37.16 0.32 -2.90 15 2 C 0.04 0.89 1.94 -92.92 -0.18 0.71 15 3 H 0.05 1.17 5.63 -51.93 -0.29 0.88 15 4 C -0.58 -16.11 8.02 -34.44 -0.28 -16.39 15 5 H 0.06 1.76 7.67 -52.48 -0.40 1.35 15 6 C 0.03 0.92 5.43 -17.82 -0.10 0.82 15 7 N -0.91 -27.73 13.70 55.43 0.76 -26.97 15 8 Si 1.05 25.25 25.29 -169.99 -4.30 20.95 15 9 H -0.28 -6.41 6.81 56.52 0.38 -6.02 15 10 H -0.28 -6.20 6.36 56.52 0.36 -5.84 15 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 15 12 C -0.09 -1.88 4.75 -104.48 -0.50 -2.38 15 13 C 0.15 2.88 6.66 -39.43 -0.26 2.62 15 14 F -0.11 -2.30 14.35 2.25 0.03 -2.26 15 15 C -0.16 -2.53 9.81 -39.47 -0.39 -2.91 15 16 C 0.00 -0.04 6.32 -39.52 -0.25 -0.29 15 17 Cl -0.06 -0.75 28.95 -51.86 -1.50 -2.25 15 18 C -0.16 -2.38 9.81 -39.47 -0.39 -2.77 15 19 C 0.13 2.31 7.24 -39.43 -0.29 2.03 15 20 F -0.12 -2.31 16.19 2.25 0.04 -2.27 15 21 H 0.05 1.10 4.40 -51.93 -0.23 0.87 15 22 H 0.06 1.32 6.44 -51.93 -0.33 0.99 15 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 24 H 0.27 8.18 8.72 -40.82 -0.36 7.82 15 25 H 0.14 1.89 8.06 -52.49 -0.42 1.47 15 26 H 0.14 1.77 8.06 -52.49 -0.42 1.34 15 LS Contribution 244.35 15.07 3.68 3.68 Total: -1.00 -28.84 244.35 -5.33 -34.17 By element: Atomic # 1 Polarization: -1.83 SS G_CDS: -1.74 Total: -3.57 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -2.31 Total: -21.47 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.76 Total: -26.97 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.07 Total: -4.54 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -4.30 Total: 20.95 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.84 -5.33 -34.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100373.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.199 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds