Wall clock time and date at job start Mon Mar 30 2020 05:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47782 * 2 1 4 4 C 1.50706 * 109.47223 * 240.00068 * 2 1 3 5 5 H 1.08008 * 120.00044 * 245.38567 * 4 2 1 6 6 C 1.37876 * 119.99818 * 65.37398 * 4 2 1 7 7 N 1.31521 * 119.99627 * 185.17718 * 6 4 2 8 8 Si 1.86792 * 120.00151 * 5.18600 * 6 4 2 9 9 H 1.48495 * 109.47374 * 269.99710 * 8 6 4 10 10 H 1.48509 * 109.47074 * 29.99651 * 8 6 4 11 11 H 1.48503 * 109.47513 * 149.99401 * 8 6 4 12 12 C 1.50708 * 109.47442 * 120.00184 * 2 1 3 13 13 C 1.38421 * 120.00880 * 59.72355 * 12 2 1 14 14 F 1.35096 * 120.01163 * 0.02562 * 13 12 2 15 15 C 1.38457 * 119.98730 * 179.74950 * 13 12 2 16 16 C 1.38324 * 120.00595 * 0.50383 * 15 13 12 17 17 Cl 1.73602 * 119.98526 * 179.74895 * 16 15 13 18 18 C 1.38327 * 120.02993 * 359.77051 * 16 15 13 19 19 C 1.38423 * 120.00966 * 239.99949 * 12 2 1 20 20 F 1.35092 * 120.00931 * 0.02562 * 19 12 2 21 21 H 1.08995 * 109.46839 * 54.88943 * 1 2 3 22 22 H 1.09001 * 109.47403 * 174.89179 * 1 2 3 23 23 H 1.08999 * 109.46930 * 294.88522 * 1 2 3 24 24 H 0.96998 * 120.00144 * 355.00755 * 7 6 4 25 25 H 1.07999 * 119.99598 * 180.27344 * 15 13 12 26 26 H 1.07998 * 119.99835 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5797 -1.6365 -1.1338 6 6 1.7930 -0.1783 -2.4797 7 7 2.1411 -0.8474 -3.5572 8 14 0.9747 1.4930 -2.6418 9 1 -0.4985 1.3186 -2.7072 10 1 1.3223 2.3306 -1.4658 11 1 1.4498 2.1588 -3.8814 12 6 2.0324 -0.7105 1.2305 13 6 1.6934 -2.0340 1.4526 14 9 0.9126 -2.6895 0.5662 15 6 2.1595 -2.6879 2.5805 16 6 2.9552 -2.0155 3.4906 17 17 3.5339 -2.8339 4.9080 18 6 3.2895 -0.6911 3.2720 19 6 2.8283 -0.0380 2.1418 20 9 3.1544 1.2556 1.9286 21 1 -0.3633 0.5910 -0.8406 22 1 -0.3634 -1.0236 -0.0915 23 1 -0.3633 0.4324 0.9323 24 1 2.6306 -1.6806 -3.4736 25 1 1.8988 -3.7218 2.7517 26 1 3.9105 -0.1666 3.9831 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261100373.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:19 Heat of formation + Delta-G solvation = -98.980719 kcal Electronic energy + Delta-G solvation = -15714.638604 eV Core-core repulsion = 12647.187304 eV Total energy + Delta-G solvation = -3067.451300 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.06457 -49.95889 -40.14010 -37.76001 -36.38913 -33.80117 -31.51020 -30.44058 -26.82645 -24.69076 -24.03742 -21.73258 -19.80663 -19.27993 -18.35504 -17.11563 -17.03640 -16.73645 -16.31643 -16.12733 -15.72888 -15.19818 -14.74380 -14.23394 -14.12235 -14.04063 -13.81528 -13.40051 -13.01767 -12.48308 -12.34681 -12.15541 -12.05148 -11.61782 -11.58778 -10.89873 -10.66030 -9.90885 -9.71472 -8.72855 -6.41678 -0.20690 -0.17276 0.80198 1.41688 1.51897 1.68154 2.16347 2.45405 2.97461 3.07706 3.25394 3.63836 3.72256 3.81865 4.18120 4.47915 4.60244 4.68202 4.74762 4.85175 4.86842 4.96363 5.14279 5.48072 5.60407 5.86821 5.99970 6.50404 7.36105 8.63941 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.035732 B = 0.007556 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.412664 B = 3704.820696 C = 4067.818839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.035 3.965 3 H 0.045 0.955 4 C -0.577 4.577 5 H 0.020 0.980 6 C -0.021 4.021 7 N -0.944 5.944 8 Si 1.088 2.912 9 H -0.261 1.261 10 H -0.251 1.251 11 H -0.291 1.291 12 C -0.126 4.126 13 C 0.128 3.872 14 F -0.130 7.130 15 C -0.149 4.149 16 C 0.006 3.994 17 Cl -0.030 7.030 18 C -0.141 4.141 19 C 0.119 3.881 20 F -0.130 7.130 21 H 0.047 0.953 22 H 0.051 0.949 23 H 0.060 0.940 24 H 0.251 0.749 25 H 0.170 0.830 26 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -0.209 17.328 17.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 H 0.063 0.937 4 C -0.615 4.615 5 H 0.038 0.962 6 C -0.218 4.218 7 N -0.580 5.580 8 Si 0.910 3.090 9 H -0.186 1.186 10 H -0.176 1.176 11 H -0.218 1.218 12 C -0.128 4.128 13 C 0.108 3.892 14 F -0.109 7.109 15 C -0.168 4.168 16 C -0.021 4.021 17 Cl -0.001 7.001 18 C -0.160 4.160 19 C 0.099 3.901 20 F -0.109 7.109 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.060 0.940 25 H 0.187 0.813 26 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.510 0.804 16.326 16.354 hybrid contribution 0.807 -1.530 0.353 1.765 sum 0.297 -0.725 16.679 16.697 Atomic orbital electron populations 1.22089 0.96036 1.01689 1.00485 1.18240 0.94118 0.96188 0.89859 0.93717 1.22045 1.38538 1.08516 0.92421 0.96177 1.27156 0.96691 1.06349 0.91652 1.70938 1.38784 1.16911 1.31376 0.83484 0.76874 0.72038 0.76621 1.18614 1.17553 1.21831 1.20457 0.99703 0.94696 0.97926 1.17148 0.93901 0.89585 0.88570 1.91504 1.71683 1.80269 1.67395 1.21148 1.00338 1.02543 0.92805 1.20059 0.98789 0.92326 0.90956 1.98383 1.87117 1.78153 1.36404 1.21119 1.03273 0.93959 0.97660 1.17073 0.98435 0.79455 0.95135 1.91486 1.90784 1.33791 1.94801 0.93393 0.93014 0.92098 0.93971 0.81261 0.80446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.13 8.49 71.98 0.61 -5.52 15 2 C 0.03 1.64 1.94 -12.28 -0.02 1.61 15 3 H 0.04 2.11 5.63 -2.39 -0.01 2.10 15 4 C -0.58 -32.80 8.02 25.60 0.21 -32.59 15 5 H 0.02 1.26 7.67 -2.91 -0.02 1.23 15 6 C -0.02 -1.25 5.43 84.65 0.46 -0.79 15 7 N -0.94 -59.86 13.70 21.45 0.29 -59.56 15 8 Si 1.09 50.61 25.29 68.60 1.73 52.35 15 9 H -0.26 -11.17 6.81 99.48 0.68 -10.49 15 10 H -0.25 -10.53 6.36 99.48 0.63 -9.90 15 11 H -0.29 -13.61 7.11 99.48 0.71 -12.91 15 12 C -0.13 -5.09 4.75 -19.77 -0.09 -5.18 15 13 C 0.13 4.80 6.66 22.37 0.15 4.95 15 14 F -0.13 -5.55 14.35 44.97 0.65 -4.90 15 15 C -0.15 -4.26 9.81 22.34 0.22 -4.04 15 16 C 0.01 0.15 6.32 22.31 0.14 0.29 15 17 Cl -0.03 -0.59 28.95 -2.72 -0.08 -0.67 15 18 C -0.14 -3.71 9.81 22.34 0.22 -3.49 15 19 C 0.12 4.08 7.24 22.37 0.16 4.24 15 20 F -0.13 -4.61 16.19 44.97 0.73 -3.88 15 21 H 0.05 2.00 4.40 -2.39 -0.01 1.99 15 22 H 0.05 2.24 6.44 -2.39 -0.02 2.22 15 23 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 24 H 0.25 16.22 8.72 -92.71 -0.81 15.41 15 25 H 0.17 3.93 8.06 -2.91 -0.02 3.91 15 26 H 0.18 3.49 8.06 -2.91 -0.02 3.46 15 Total: -1.00 -64.49 244.35 6.45 -58.03 By element: Atomic # 1 Polarization: -1.93 SS G_CDS: 1.08 Total: -0.85 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 2.05 Total: -40.52 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.29 Total: -59.56 kcal Atomic # 9 Polarization: -10.15 SS G_CDS: 1.37 Total: -8.78 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 1.73 Total: 52.35 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -64.49 6.45 -58.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261100373.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.946 kcal (2) G-P(sol) polarization free energy of solvation -64.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds