Wall clock time and date at job start Mon Mar 30 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31797 * 119.12294 * 2 1 4 4 C 1.32333 * 120.82126 * 179.97438 * 3 2 1 5 5 C 1.38592 * 119.10176 * 359.97438 * 4 3 2 6 6 C 1.50709 * 120.80180 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.46789 * 0.02562 * 6 5 4 8 8 C 1.50700 * 109.47335 * 119.99718 * 6 5 4 9 9 H 1.07997 * 119.99743 * 5.58779 * 8 6 5 10 10 C 1.37871 * 119.99950 * 185.58842 * 8 6 5 11 11 N 1.31517 * 120.00116 * 18.59232 * 10 8 6 12 12 Si 1.86796 * 120.00126 * 198.59507 * 10 8 6 13 13 H 1.48504 * 109.47437 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47133 * 299.99789 * 12 10 8 15 15 H 1.48495 * 109.47187 * 59.99533 * 12 10 8 16 16 C 1.53003 * 109.47158 * 240.00260 * 6 5 4 17 17 F 1.39899 * 109.46702 * 294.24390 * 16 6 5 18 18 F 1.39899 * 109.46955 * 54.24170 * 16 6 5 19 19 F 1.39893 * 109.47069 * 174.24314 * 16 6 5 20 20 C 1.38597 * 118.40360 * 0.27476 * 5 4 3 21 21 N 1.31799 * 119.12382 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.46798 * 90.00668 * 1 2 3 23 23 H 1.09005 * 109.47047 * 210.00109 * 1 2 3 24 24 H 1.08996 * 109.47578 * 330.00396 * 1 2 3 25 25 H 1.07997 * 120.44768 * 180.02562 * 4 3 2 26 26 H 0.97001 * 120.00226 * 5.65559 * 11 10 8 27 27 H 1.08001 * 120.45122 * 179.73054 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4711 1.1906 0.0005 5 6 4.1808 0.0001 0.0016 6 6 5.6879 0.0001 0.0028 7 1 6.0512 1.0278 0.0031 8 6 6.1893 -0.7097 1.2340 9 1 5.4911 -1.1980 1.8977 10 6 7.5392 -0.7358 1.5129 11 7 8.3451 0.1342 0.9445 12 14 8.2236 -2.0070 2.6983 13 1 9.6917 -1.8240 2.8271 14 1 7.5856 -1.8375 4.0285 15 1 7.9375 -3.3697 2.1822 16 6 6.1989 -0.7217 -1.2458 17 9 5.8436 -2.0733 -1.1812 18 9 5.6285 -0.1434 -2.3849 19 9 7.5916 -0.6083 -1.3128 20 6 3.4712 -1.1904 -0.0038 21 7 2.1484 -1.1514 0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 3.9906 2.1374 0.0009 26 1 7.9810 0.8450 0.3939 27 1 3.9907 -2.1372 -0.0075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261108991.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:51 Heat of formation + Delta-G solvation = -117.560585 kcal Electronic energy + Delta-G solvation = -18327.964742 eV Core-core repulsion = 14863.664135 eV Total energy + Delta-G solvation = -3464.300607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.98853 -46.54470 -46.38016 -40.61175 -35.15586 -33.26322 -32.68969 -30.13401 -26.84560 -24.60178 -24.16230 -22.76077 -21.05951 -17.85167 -17.60084 -17.16138 -17.04291 -16.29968 -15.84856 -14.77399 -14.03159 -13.74770 -13.55332 -13.21169 -13.12811 -12.96989 -12.89059 -12.77417 -12.62335 -12.51030 -12.27513 -12.18886 -11.42329 -11.17720 -10.78677 -10.36942 -10.29662 -10.12328 -9.55675 -8.85907 -8.73992 -8.46709 -6.78770 -4.56310 1.33092 1.51431 3.28716 3.34139 3.51531 3.91323 4.16511 4.29389 4.31232 4.53536 4.80102 5.06071 5.13198 5.34215 5.40748 5.52244 5.58003 5.65229 5.68314 5.84707 6.09979 6.32189 6.66282 6.85092 7.38100 7.45016 8.02574 8.38225 8.47862 9.11369 10.55449 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027538 B = 0.009017 C = 0.007940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.522687 B = 3104.333092 C = 3525.539264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.288 3.712 3 N -0.522 5.522 4 C 0.148 3.852 5 C -0.151 4.151 6 C 0.045 3.955 7 H 0.071 0.929 8 C -0.614 4.614 9 H 0.068 0.932 10 C 0.040 3.960 11 N -0.857 5.857 12 Si 1.064 2.936 13 H -0.278 1.278 14 H -0.284 1.284 15 H -0.280 1.280 16 C 0.430 3.570 17 F -0.191 7.191 18 F -0.216 7.216 19 F -0.174 7.174 20 C 0.159 3.841 21 N -0.521 5.521 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.164 0.836 26 H 0.276 0.724 27 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.732 -0.140 -1.928 7.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.020 3.980 3 N -0.237 5.237 4 C -0.017 4.017 5 C -0.155 4.155 6 C 0.023 3.977 7 H 0.089 0.911 8 C -0.649 4.649 9 H 0.087 0.913 10 C -0.172 4.172 11 N -0.486 5.486 12 Si 0.890 3.110 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.206 1.206 16 C 0.375 3.625 17 F -0.173 7.173 18 F -0.198 7.198 19 F -0.155 7.155 20 C -0.006 4.006 21 N -0.235 5.235 22 H 0.097 0.903 23 H 0.099 0.901 24 H 0.099 0.901 25 H 0.182 0.818 26 H 0.088 0.912 27 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -7.307 -0.702 -1.317 7.458 hybrid contribution -0.213 0.489 -0.946 1.085 sum -7.520 -0.214 -2.263 7.856 Atomic orbital electron populations 1.20447 0.86330 1.03572 1.03263 1.23117 0.97919 0.83994 0.92939 1.68177 1.09968 1.30495 1.15011 1.23049 0.89217 0.98257 0.91208 1.21543 0.98408 0.95347 1.00230 1.18908 0.87487 0.98887 0.92376 0.91094 1.21569 0.95522 1.39548 1.08278 0.91338 1.26026 0.93328 0.98937 0.98927 1.70768 1.38960 1.11482 1.27438 0.83619 0.76551 0.75565 0.75302 1.20339 1.20966 1.20618 1.22641 0.76052 0.78102 0.85704 1.93007 1.91703 1.36029 1.96519 1.93055 1.85304 1.84720 1.56727 1.93181 1.30030 1.95745 1.96589 1.23359 0.88739 0.99290 0.89225 1.68260 1.10241 1.30308 1.14713 0.90250 0.90062 0.90124 0.81847 0.91241 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.32 36.00 0.37 -0.60 15 2 C 0.29 5.04 7.64 -157.19 -1.20 3.84 15 3 N -0.52 -9.53 10.33 -10.73 -0.11 -9.64 15 4 C 0.15 2.76 10.96 -17.21 -0.19 2.57 15 5 C -0.15 -3.10 4.36 -104.35 -0.45 -3.56 15 6 C 0.04 1.01 1.89 -92.92 -0.18 0.83 15 7 H 0.07 1.61 6.93 -51.93 -0.36 1.25 15 8 C -0.61 -15.29 7.77 -34.44 -0.27 -15.56 15 9 H 0.07 1.72 7.63 -52.49 -0.40 1.32 15 10 C 0.04 1.01 4.79 -17.82 -0.09 0.93 15 11 N -0.86 -23.13 12.09 55.43 0.67 -22.46 15 12 Si 1.06 23.12 29.94 -169.99 -5.09 18.03 15 13 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 14 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 15 16 C 0.43 9.84 2.65 37.16 0.10 9.94 15 17 F -0.19 -4.33 14.69 2.25 0.03 -4.30 15 18 F -0.22 -4.67 16.87 2.25 0.04 -4.63 15 19 F -0.17 -4.33 14.20 2.25 0.03 -4.29 15 20 C 0.16 3.22 9.80 -17.20 -0.17 3.05 15 21 N -0.52 -9.94 10.34 -10.72 -0.11 -10.05 15 22 H 0.08 0.87 8.14 -51.93 -0.42 0.45 15 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.16 2.63 8.01 -52.49 -0.42 2.21 15 26 H 0.28 7.37 6.37 -40.82 -0.26 7.11 15 27 H 0.17 3.46 6.56 -52.49 -0.34 3.12 15 LS Contribution 249.88 15.07 3.77 3.77 Total: -1.00 -27.72 249.88 -4.69 -32.41 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -1.85 Total: -0.26 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: -2.07 Total: 1.44 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.45 Total: -42.15 kcal Atomic # 9 Polarization: -13.33 SS G_CDS: 0.10 Total: -13.23 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.09 Total: 18.03 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -27.72 -4.69 -32.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108991.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.150 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds