Wall clock time and date at job start Mon Mar 30 2020 06:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31797 * 119.12294 * 2 1 4 4 C 1.32333 * 120.82126 * 179.97438 * 3 2 1 5 5 C 1.38592 * 119.10176 * 359.97438 * 4 3 2 6 6 C 1.50709 * 120.80180 * 180.02562 * 5 4 3 7 7 H 1.09007 * 109.46789 * 0.02562 * 6 5 4 8 8 C 1.50700 * 109.47335 * 119.99718 * 6 5 4 9 9 H 1.07997 * 119.99743 * 5.58779 * 8 6 5 10 10 C 1.37871 * 119.99950 * 185.58842 * 8 6 5 11 11 N 1.31517 * 120.00116 * 18.59232 * 10 8 6 12 12 Si 1.86796 * 120.00126 * 198.59507 * 10 8 6 13 13 H 1.48504 * 109.47437 * 180.02562 * 12 10 8 14 14 H 1.48503 * 109.47133 * 299.99789 * 12 10 8 15 15 H 1.48495 * 109.47187 * 59.99533 * 12 10 8 16 16 C 1.53003 * 109.47158 * 240.00260 * 6 5 4 17 17 F 1.39899 * 109.46702 * 294.24390 * 16 6 5 18 18 F 1.39899 * 109.46955 * 54.24170 * 16 6 5 19 19 F 1.39893 * 109.47069 * 174.24314 * 16 6 5 20 20 C 1.38597 * 118.40360 * 0.27476 * 5 4 3 21 21 N 1.31799 * 119.12382 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.46798 * 90.00668 * 1 2 3 23 23 H 1.09005 * 109.47047 * 210.00109 * 1 2 3 24 24 H 1.08996 * 109.47578 * 330.00396 * 1 2 3 25 25 H 1.07997 * 120.44768 * 180.02562 * 4 3 2 26 26 H 0.97001 * 120.00226 * 5.65559 * 11 10 8 27 27 H 1.08001 * 120.45122 * 179.73054 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1484 1.1514 0.0000 4 6 3.4711 1.1906 0.0005 5 6 4.1808 0.0001 0.0016 6 6 5.6879 0.0001 0.0028 7 1 6.0512 1.0278 0.0031 8 6 6.1893 -0.7097 1.2340 9 1 5.4911 -1.1980 1.8977 10 6 7.5392 -0.7358 1.5129 11 7 8.3451 0.1342 0.9445 12 14 8.2236 -2.0070 2.6983 13 1 9.6917 -1.8240 2.8271 14 1 7.5856 -1.8375 4.0285 15 1 7.9375 -3.3697 2.1822 16 6 6.1989 -0.7217 -1.2458 17 9 5.8436 -2.0733 -1.1812 18 9 5.6285 -0.1434 -2.3849 19 9 7.5916 -0.6083 -1.3128 20 6 3.4712 -1.1904 -0.0038 21 7 2.1484 -1.1514 0.0005 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3634 0.8900 0.5137 25 1 3.9906 2.1374 0.0009 26 1 7.9810 0.8450 0.3939 27 1 3.9907 -2.1372 -0.0075 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108991.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:51 Heat of formation + Delta-G solvation = -133.153079 kcal Electronic energy + Delta-G solvation = -18328.640883 eV Core-core repulsion = 14863.664135 eV Total energy + Delta-G solvation = -3464.976749 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.83943 -48.36525 -48.27760 -42.07166 -36.88343 -34.72531 -34.35590 -31.62988 -28.30831 -26.50376 -25.68502 -24.34533 -22.71515 -19.69126 -19.36597 -19.01252 -18.68110 -17.81001 -17.51620 -16.15205 -15.81073 -15.52357 -15.32719 -14.93874 -14.76515 -14.73315 -14.63387 -14.50222 -14.31792 -14.11888 -13.48792 -13.22307 -13.17726 -12.94682 -12.50107 -11.97340 -11.84306 -11.75443 -11.36527 -10.61477 -10.27833 -10.13981 -8.78327 -6.55692 -0.14467 0.01206 1.55632 1.60280 1.81408 2.11869 2.48053 2.69243 2.90087 3.01356 3.13776 3.32494 3.47984 3.57151 3.69134 3.94886 4.07429 4.34936 4.60543 4.73122 4.77160 5.01059 5.05564 5.44249 5.58078 5.89493 6.03889 6.38484 7.03086 7.17156 8.56339 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027538 B = 0.009017 C = 0.007940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.522687 B = 3104.333092 C = 3525.539264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.286 3.714 3 N -0.526 5.526 4 C 0.153 3.847 5 C -0.174 4.174 6 C 0.049 3.951 7 H 0.067 0.933 8 C -0.619 4.619 9 H 0.062 0.938 10 C 0.001 3.999 11 N -0.882 5.882 12 Si 1.100 2.900 13 H -0.282 1.282 14 H -0.267 1.267 15 H -0.272 1.272 16 C 0.432 3.568 17 F -0.190 7.190 18 F -0.208 7.208 19 F -0.187 7.187 20 C 0.154 3.846 21 N -0.530 5.530 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.186 0.814 26 H 0.268 0.732 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 -0.200 -1.675 9.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.019 3.981 3 N -0.240 5.240 4 C -0.013 4.013 5 C -0.178 4.178 6 C 0.028 3.972 7 H 0.085 0.915 8 C -0.655 4.655 9 H 0.080 0.920 10 C -0.206 4.206 11 N -0.513 5.513 12 Si 0.921 3.079 13 H -0.207 1.207 14 H -0.192 1.192 15 H -0.198 1.198 16 C 0.377 3.623 17 F -0.172 7.172 18 F -0.189 7.189 19 F -0.168 7.168 20 C -0.012 4.012 21 N -0.245 5.245 22 H 0.118 0.882 23 H 0.113 0.887 24 H 0.116 0.884 25 H 0.203 0.797 26 H 0.079 0.921 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.845 -0.762 -1.070 8.942 hybrid contribution 0.127 0.531 -1.074 1.205 sum -8.718 -0.232 -2.144 8.981 Atomic orbital electron populations 1.20655 0.82681 1.05082 1.04975 1.24153 1.00062 0.83301 0.90564 1.68340 1.09509 1.30742 1.15416 1.23405 0.89622 0.98522 0.89716 1.21398 0.97166 0.96372 1.02906 1.18757 0.89048 0.98120 0.91303 0.91520 1.21728 0.95408 1.39450 1.08882 0.91983 1.27106 0.94081 0.99684 0.99716 1.70859 1.39261 1.12334 1.28889 0.83156 0.75902 0.74161 0.74662 1.20740 1.19222 1.19753 1.22525 0.75442 0.78186 0.86133 1.93004 1.91628 1.35997 1.96559 1.93062 1.85062 1.84572 1.56241 1.93157 1.31186 1.95820 1.96682 1.23323 0.89488 0.99040 0.89308 1.68356 1.09531 1.31140 1.15464 0.88219 0.88726 0.88442 0.79745 0.92131 0.81519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.32 71.23 0.74 -0.90 15 2 C 0.29 9.32 7.64 138.75 1.06 10.38 15 3 N -0.53 -18.01 10.33 -187.85 -1.94 -19.96 15 4 C 0.15 5.48 10.96 84.70 0.93 6.40 15 5 C -0.17 -7.02 4.36 -19.69 -0.09 -7.11 15 6 C 0.05 2.21 1.89 -12.28 -0.02 2.18 15 7 H 0.07 3.05 6.93 -2.38 -0.02 3.03 15 8 C -0.62 -30.79 7.77 25.60 0.20 -30.60 15 9 H 0.06 3.11 7.63 -2.91 -0.02 3.09 15 10 C 0.00 0.04 4.79 84.65 0.41 0.45 15 11 N -0.88 -47.95 12.09 21.45 0.26 -47.69 15 12 Si 1.10 46.08 29.94 68.60 2.05 48.13 15 13 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 14 H -0.27 -10.41 7.11 99.48 0.71 -9.70 15 15 H -0.27 -10.95 7.11 99.48 0.71 -10.25 15 16 C 0.43 19.71 2.65 71.98 0.19 19.91 15 17 F -0.19 -8.59 14.69 44.97 0.66 -7.93 15 18 F -0.21 -8.85 16.87 44.97 0.76 -8.09 15 19 F -0.19 -9.35 14.20 44.97 0.64 -8.71 15 20 C 0.15 6.09 9.80 84.70 0.83 6.92 15 21 N -0.53 -19.37 10.34 -187.84 -1.94 -21.31 15 22 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 23 H 0.09 1.81 8.14 -2.38 -0.02 1.79 15 24 H 0.10 1.80 8.14 -2.39 -0.02 1.78 15 25 H 0.19 5.63 8.01 -2.91 -0.02 5.61 15 26 H 0.27 14.53 6.37 -92.71 -0.59 13.94 15 27 H 0.17 6.67 6.56 -2.91 -0.02 6.65 15 Total: -1.00 -57.51 249.88 6.12 -51.39 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.39 Total: 6.53 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 4.24 Total: 7.64 kcal Atomic # 7 Polarization: -85.33 SS G_CDS: -3.62 Total: -88.96 kcal Atomic # 9 Polarization: -26.79 SS G_CDS: 2.06 Total: -24.73 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.05 Total: 48.13 kcal Total: -57.51 6.12 -51.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108991.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.762 kcal (2) G-P(sol) polarization free energy of solvation -57.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds