Wall clock time and date at job start Mon Mar 30 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31792 * 119.12031 * 2 1 4 4 C 1.32338 * 120.81950 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.10453 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.80179 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.47512 * 0.02562 * 6 5 4 8 8 C 1.50698 * 109.46911 * 239.99743 * 6 5 4 9 9 H 1.07993 * 120.00472 * 359.97438 * 8 6 5 10 10 C 1.37884 * 119.99909 * 180.02562 * 8 6 5 11 11 N 1.31522 * 119.99817 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 120.00071 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46971 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46790 * 119.99973 * 12 10 8 15 15 H 1.48501 * 109.47046 * 239.99648 * 12 10 8 16 16 C 1.53006 * 109.46866 * 119.99954 * 6 5 4 17 17 F 1.39897 * 109.47129 * 60.00167 * 16 6 5 18 18 F 1.39900 * 109.46764 * 180.02562 * 16 6 5 19 19 F 1.39895 * 109.46931 * 299.99888 * 16 6 5 20 20 C 1.38607 * 118.39717 * 0.26799 * 5 4 3 21 21 N 1.31794 * 119.12327 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.47527 * 89.99985 * 1 2 3 23 23 H 1.09004 * 109.46717 * 209.99660 * 1 2 3 24 24 H 1.08996 * 109.47329 * 329.99265 * 1 2 3 25 25 H 1.08003 * 120.45011 * 179.97438 * 4 3 2 26 26 H 0.96991 * 120.00052 * 179.97438 * 11 10 8 27 27 H 1.07998 * 120.44614 * 179.72699 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1483 1.1513 0.0000 4 6 3.4711 1.1906 0.0005 5 6 4.1809 0.0001 0.0005 6 6 5.6878 0.0002 0.0005 7 1 6.0512 1.0278 0.0010 8 6 6.1901 -0.7103 -1.2299 9 1 5.4884 -1.1211 -1.9406 10 6 7.5458 -0.8367 -1.4479 11 7 8.4004 -0.3377 -0.5817 12 14 8.1684 -1.7167 -2.9734 13 1 7.0134 -2.1819 -3.7826 14 1 8.9940 -0.7831 -3.7810 15 1 8.9929 -2.8839 -2.5697 16 6 6.1978 -0.7211 1.2498 17 9 5.7316 -2.0401 1.2498 18 9 7.5968 -0.7205 1.2501 19 9 5.7315 -0.0616 2.3920 20 6 3.4712 -1.1904 -0.0057 21 7 2.1484 -1.1513 0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 3.9906 2.1375 0.0001 26 1 9.3540 -0.4269 -0.7348 27 1 3.9907 -2.1372 -0.0104 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261108995.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:53 Heat of formation + Delta-G solvation = -97.730942 kcal Electronic energy + Delta-G solvation = -18334.838174 eV Core-core repulsion = 14871.397445 eV Total energy + Delta-G solvation = -3463.440730 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.58842 -46.24950 -45.77012 -40.51262 -34.86275 -33.17132 -32.57620 -30.20966 -26.89268 -24.69601 -24.08970 -22.61531 -20.76819 -17.63494 -17.10521 -16.90441 -16.66906 -16.16678 -15.36421 -14.83814 -14.67826 -13.42517 -13.31374 -13.03454 -12.83517 -12.71124 -12.59848 -12.51979 -12.33500 -12.22547 -12.08256 -11.93176 -11.33176 -10.97366 -10.69294 -10.64764 -10.27556 -9.89418 -9.76102 -8.80920 -8.64073 -8.54022 -6.29383 -4.51359 1.42839 1.60879 3.14371 3.23296 3.27403 4.11341 4.20454 4.37226 4.43544 4.62440 4.85911 5.25450 5.30671 5.58069 5.64974 5.68917 5.71782 5.73990 5.80847 6.07227 6.32463 6.48253 6.93481 6.98186 7.47727 7.54689 7.66183 8.48734 8.56687 9.15839 10.62387 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027196 B = 0.009117 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.327017 B = 3070.487319 C = 3589.428106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.286 3.714 3 N -0.524 5.524 4 C 0.148 3.852 5 C -0.157 4.157 6 C 0.057 3.943 7 H 0.077 0.923 8 C -0.532 4.532 9 H 0.073 0.927 10 C 0.063 3.937 11 N -0.842 5.842 12 Si 0.910 3.090 13 H -0.269 1.269 14 H -0.280 1.280 15 H -0.279 1.279 16 C 0.433 3.567 17 F -0.205 7.205 18 F -0.134 7.134 19 F -0.227 7.227 20 C 0.160 3.840 21 N -0.523 5.523 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.165 0.835 26 H 0.267 0.733 27 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.868 0.741 1.237 7.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.019 3.981 3 N -0.239 5.239 4 C -0.018 4.018 5 C -0.161 4.161 6 C 0.036 3.964 7 H 0.095 0.905 8 C -0.569 4.569 9 H 0.091 0.909 10 C -0.144 4.144 11 N -0.475 5.475 12 Si 0.737 3.263 13 H -0.194 1.194 14 H -0.206 1.206 15 H -0.205 1.205 16 C 0.378 3.622 17 F -0.187 7.187 18 F -0.115 7.115 19 F -0.209 7.209 20 C -0.006 4.006 21 N -0.238 5.238 22 H 0.097 0.903 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.182 0.818 26 H 0.078 0.922 27 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.643 0.757 1.313 7.792 hybrid contribution 1.628 -0.560 -0.510 1.795 sum -6.015 0.197 0.803 6.072 Atomic orbital electron populations 1.20437 0.86477 1.03446 1.03221 1.23084 0.97853 0.84067 0.93123 1.68170 1.10102 1.30478 1.15118 1.23082 0.89124 0.98389 0.91159 1.21797 0.99220 0.95186 0.99924 1.18853 0.85867 0.99583 0.92132 0.90493 1.20791 0.92122 1.38528 1.05422 0.90860 1.25140 0.96773 0.95396 0.97134 1.70371 1.02899 1.41832 1.32412 0.86223 0.79014 0.79266 0.81844 1.19366 1.20550 1.20487 1.22706 0.78003 0.76944 0.84574 1.92964 1.88983 1.40007 1.96780 1.93432 1.26323 1.95977 1.95760 1.93031 1.89449 1.81486 1.56958 1.23424 0.88630 0.99460 0.89060 1.68257 1.10387 1.30294 1.14818 0.90289 0.90166 0.90215 0.81764 0.92239 0.80809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.32 36.00 0.37 -0.61 15 2 C 0.29 5.06 7.64 -157.20 -1.20 3.86 15 3 N -0.52 -9.64 10.33 -10.73 -0.11 -9.75 15 4 C 0.15 2.77 10.96 -17.20 -0.19 2.58 15 5 C -0.16 -3.25 4.48 -104.35 -0.47 -3.72 15 6 C 0.06 1.30 2.18 -92.92 -0.20 1.10 15 7 H 0.08 1.79 7.95 -51.93 -0.41 1.38 15 8 C -0.53 -13.19 8.00 -34.44 -0.28 -13.46 15 9 H 0.07 1.82 7.61 -52.49 -0.40 1.42 15 10 C 0.06 1.60 5.20 -17.81 -0.09 1.50 15 11 N -0.84 -22.02 9.50 55.43 0.53 -21.49 15 12 Si 0.91 19.82 29.54 -169.99 -5.02 14.80 15 13 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 14 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 16 C 0.43 10.23 2.66 37.16 0.10 10.33 15 17 F -0.21 -4.76 14.54 2.25 0.03 -4.73 15 18 F -0.13 -3.47 12.91 2.25 0.03 -3.44 15 19 F -0.23 -5.12 17.02 2.25 0.04 -5.08 15 20 C 0.16 3.25 9.69 -17.20 -0.17 3.08 15 21 N -0.52 -10.08 10.33 -10.72 -0.11 -10.19 15 22 H 0.08 0.89 8.14 -51.92 -0.42 0.47 15 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.08 0.90 8.14 -51.93 -0.42 0.47 15 25 H 0.17 2.65 8.01 -52.48 -0.42 2.23 15 26 H 0.27 6.66 8.31 -40.82 -0.34 6.32 15 27 H 0.17 3.53 6.52 -52.49 -0.34 3.19 15 LS Contribution 249.45 15.07 3.76 3.76 Total: -1.00 -27.30 249.45 -4.96 -32.26 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -1.98 Total: -0.80 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -2.12 Total: 4.66 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.30 Total: -41.43 kcal Atomic # 9 Polarization: -13.35 SS G_CDS: 0.10 Total: -13.25 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.30 -4.96 -32.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108995.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.472 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds