Wall clock time and date at job start Mon Mar 30 2020 06:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31792 * 119.12031 * 2 1 4 4 C 1.32338 * 120.81950 * 179.97438 * 3 2 1 5 5 C 1.38597 * 119.10453 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.80179 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.47512 * 0.02562 * 6 5 4 8 8 C 1.50698 * 109.46911 * 239.99743 * 6 5 4 9 9 H 1.07993 * 120.00472 * 359.97438 * 8 6 5 10 10 C 1.37884 * 119.99909 * 180.02562 * 8 6 5 11 11 N 1.31522 * 119.99817 * 0.02562 * 10 8 6 12 12 Si 1.86798 * 120.00071 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.46971 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46790 * 119.99973 * 12 10 8 15 15 H 1.48501 * 109.47046 * 239.99648 * 12 10 8 16 16 C 1.53006 * 109.46866 * 119.99954 * 6 5 4 17 17 F 1.39897 * 109.47129 * 60.00167 * 16 6 5 18 18 F 1.39900 * 109.46764 * 180.02562 * 16 6 5 19 19 F 1.39895 * 109.46931 * 299.99888 * 16 6 5 20 20 C 1.38607 * 118.39717 * 0.26799 * 5 4 3 21 21 N 1.31794 * 119.12327 * 179.97438 * 2 1 3 22 22 H 1.09007 * 109.47527 * 89.99985 * 1 2 3 23 23 H 1.09004 * 109.46717 * 209.99660 * 1 2 3 24 24 H 1.08996 * 109.47329 * 329.99265 * 1 2 3 25 25 H 1.08003 * 120.45011 * 179.97438 * 4 3 2 26 26 H 0.96991 * 120.00052 * 179.97438 * 11 10 8 27 27 H 1.07998 * 120.44614 * 179.72699 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1483 1.1513 0.0000 4 6 3.4711 1.1906 0.0005 5 6 4.1809 0.0001 0.0005 6 6 5.6878 0.0002 0.0005 7 1 6.0512 1.0278 0.0010 8 6 6.1901 -0.7103 -1.2299 9 1 5.4884 -1.1211 -1.9406 10 6 7.5458 -0.8367 -1.4479 11 7 8.4004 -0.3377 -0.5817 12 14 8.1684 -1.7167 -2.9734 13 1 7.0134 -2.1819 -3.7826 14 1 8.9940 -0.7831 -3.7810 15 1 8.9929 -2.8839 -2.5697 16 6 6.1978 -0.7211 1.2498 17 9 5.7316 -2.0401 1.2498 18 9 7.5968 -0.7205 1.2501 19 9 5.7315 -0.0616 2.3920 20 6 3.4712 -1.1904 -0.0057 21 7 2.1484 -1.1513 0.0005 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 3.9906 2.1375 0.0001 26 1 9.3540 -0.4269 -0.7348 27 1 3.9907 -2.1372 -0.0104 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261108995.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:53 Heat of formation + Delta-G solvation = -112.907686 kcal Electronic energy + Delta-G solvation = -18335.496287 eV Core-core repulsion = 14871.397445 eV Total energy + Delta-G solvation = -3464.098843 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.47789 -48.11518 -47.72128 -41.98139 -36.56185 -34.64359 -34.27465 -31.71148 -28.36858 -26.58571 -25.60025 -24.19393 -22.45187 -19.41678 -18.88729 -18.71972 -18.45827 -17.62019 -17.13023 -16.67786 -16.05735 -15.17618 -15.07309 -14.59484 -14.56503 -14.47796 -14.34375 -14.18626 -14.06295 -13.83717 -13.45575 -13.14930 -13.08198 -12.72737 -12.51630 -12.34663 -11.76477 -11.60884 -11.51377 -10.66186 -10.19244 -10.09575 -8.20269 -6.47083 -0.05554 0.09703 1.42001 1.46043 1.56481 2.34803 2.44099 2.78920 2.95021 3.10038 3.21674 3.60233 3.72805 3.83053 3.88767 4.11100 4.29817 4.52522 4.69462 4.76941 4.95966 5.06949 5.22266 5.52476 5.60426 5.79985 5.99771 6.55565 7.10826 7.22735 8.71572 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027196 B = 0.009117 C = 0.007799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.327017 B = 3070.487319 C = 3589.428106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.284 3.716 3 N -0.528 5.528 4 C 0.153 3.847 5 C -0.179 4.179 6 C 0.062 3.938 7 H 0.070 0.930 8 C -0.542 4.542 9 H 0.068 0.932 10 C 0.022 3.978 11 N -0.868 5.868 12 Si 0.966 3.034 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.280 1.280 16 C 0.431 3.569 17 F -0.204 7.204 18 F -0.149 7.149 19 F -0.221 7.221 20 C 0.154 3.846 21 N -0.533 5.533 22 H 0.098 0.902 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.188 0.812 26 H 0.268 0.732 27 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.187 0.950 0.723 8.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.017 3.983 3 N -0.242 5.242 4 C -0.012 4.012 5 C -0.183 4.183 6 C 0.041 3.959 7 H 0.087 0.913 8 C -0.578 4.578 9 H 0.086 0.914 10 C -0.183 4.183 11 N -0.502 5.502 12 Si 0.791 3.209 13 H -0.191 1.191 14 H -0.200 1.200 15 H -0.206 1.206 16 C 0.376 3.624 17 F -0.186 7.186 18 F -0.130 7.130 19 F -0.203 7.203 20 C -0.012 4.012 21 N -0.248 5.248 22 H 0.116 0.884 23 H 0.112 0.888 24 H 0.115 0.885 25 H 0.204 0.796 26 H 0.078 0.922 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.980 0.965 0.803 9.068 hybrid contribution 1.939 -0.608 -0.309 2.055 sum -7.041 0.358 0.494 7.068 Atomic orbital electron populations 1.20638 0.82844 1.04991 1.04875 1.24111 0.99992 0.83381 0.90806 1.68333 1.09661 1.30687 1.15507 1.23443 0.89499 0.98656 0.89619 1.21623 0.97925 0.96201 1.02544 1.18687 0.87492 0.98621 0.91060 0.91259 1.20973 0.92217 1.38638 1.05970 0.91359 1.25823 0.97024 0.96009 0.99435 1.70463 1.03050 1.42901 1.33789 0.85360 0.78389 0.78197 0.78964 1.19125 1.19969 1.20601 1.22760 0.77341 0.77151 0.85141 1.92960 1.88882 1.39965 1.96818 1.93399 1.27635 1.96072 1.95885 1.93030 1.89278 1.81344 1.56666 1.23362 0.89376 0.99191 0.89241 1.68347 1.09683 1.31161 1.15595 0.88364 0.88834 0.88465 0.79562 0.92228 0.81553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 10.32 71.23 0.74 -0.92 15 2 C 0.28 9.39 7.64 138.75 1.06 10.45 15 3 N -0.53 -18.23 10.33 -187.85 -1.94 -20.17 15 4 C 0.15 5.52 10.96 84.70 0.93 6.45 15 5 C -0.18 -7.28 4.48 -19.69 -0.09 -7.37 15 6 C 0.06 2.86 2.18 -12.28 -0.03 2.84 15 7 H 0.07 3.25 7.95 -2.39 -0.02 3.23 15 8 C -0.54 -26.83 8.00 25.60 0.20 -26.62 15 9 H 0.07 3.38 7.61 -2.91 -0.02 3.36 15 10 C 0.02 1.11 5.20 84.66 0.44 1.55 15 11 N -0.87 -45.56 9.50 21.45 0.20 -45.35 15 12 Si 0.97 40.39 29.54 68.60 2.03 42.42 15 13 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 14 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 15 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 16 C 0.43 20.43 2.66 71.98 0.19 20.62 15 17 F -0.20 -9.51 14.54 44.97 0.65 -8.85 15 18 F -0.15 -7.77 12.91 44.97 0.58 -7.19 15 19 F -0.22 -9.91 17.02 44.97 0.77 -9.14 15 20 C 0.15 6.17 9.69 84.70 0.82 6.99 15 21 N -0.53 -19.78 10.33 -187.84 -1.94 -21.72 15 22 H 0.10 1.84 8.14 -2.38 -0.02 1.82 15 23 H 0.09 1.83 8.14 -2.38 -0.02 1.81 15 24 H 0.10 1.83 8.14 -2.39 -0.02 1.81 15 25 H 0.19 5.69 8.01 -2.91 -0.02 5.66 15 26 H 0.27 13.39 8.31 -92.71 -0.77 12.62 15 27 H 0.17 6.80 6.52 -2.91 -0.02 6.78 15 Total: -1.00 -56.44 249.45 5.82 -50.62 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.21 Total: 5.43 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 4.27 Total: 13.98 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -3.68 Total: -87.25 kcal Atomic # 9 Polarization: -27.19 SS G_CDS: 2.00 Total: -25.19 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Total: -56.44 5.82 -50.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261108995.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.288 kcal (2) G-P(sol) polarization free energy of solvation -56.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds