Wall clock time and date at job start Mon Mar 30 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48498 * 109.46963 * 274.66275 * 3 2 1 5 5 H 1.48500 * 109.47241 * 34.65959 * 3 2 1 6 6 H 1.48497 * 109.47218 * 154.66536 * 3 2 1 7 7 C 1.39943 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99846 * 162.22912 * 7 2 1 9 9 C 1.41394 * 120.00148 * 342.23048 * 7 2 1 10 10 C 1.40720 * 120.24470 * 155.28693 * 9 7 2 11 11 C 1.37620 * 119.74215 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.25152 * 359.97438 * 11 10 9 13 13 C 1.50700 * 119.74987 * 180.02562 * 12 11 10 14 14 H 1.08997 * 109.46987 * 24.99776 * 13 12 11 15 15 O 1.42901 * 109.46991 * 144.99599 * 13 12 11 16 16 C 1.52998 * 109.46985 * 264.99688 * 13 12 11 17 17 F 1.39901 * 109.47258 * 299.99929 * 16 13 12 18 18 F 1.39898 * 109.46974 * 60.00197 * 16 13 12 19 19 F 1.39900 * 109.46771 * 179.97438 * 16 13 12 20 20 C 1.38634 * 120.50079 * 0.28561 * 12 11 10 21 21 C 1.37622 * 120.24845 * 359.45778 * 20 12 11 22 22 H 0.96997 * 119.99974 * 0.02562 * 1 2 3 23 23 H 1.07996 * 120.12461 * 0.02562 * 10 9 7 24 24 H 1.07996 * 119.87053 * 179.97438 * 11 10 9 25 25 H 0.96703 * 113.99826 * 60.00406 * 15 13 12 26 26 H 1.07998 * 119.87830 * 179.69913 * 20 12 11 27 27 H 1.07999 * 120.12951 * 180.26628 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3912 2.1033 -1.3954 5 1 1.4925 2.6222 0.7962 6 1 3.5857 1.4137 0.5991 7 6 2.0080 -1.2120 0.0005 8 1 3.0493 -1.2344 -0.2849 9 6 1.3516 -2.4071 0.3748 10 6 1.8218 -3.6494 -0.0898 11 6 1.1747 -4.8061 0.2804 12 6 0.0640 -4.7508 1.1083 13 6 -0.6356 -6.0246 1.5072 14 1 0.0658 -6.8570 1.4516 15 8 -1.1235 -5.9013 2.8446 16 6 -1.8079 -6.2812 0.5581 17 9 -2.7082 -5.2127 0.6295 18 9 -1.3301 -6.4019 -0.7512 19 9 -2.4570 -7.4640 0.9281 20 6 -0.4112 -3.5321 1.5676 21 6 0.2232 -2.3630 1.2145 22 1 -0.4850 0.8400 -0.0004 23 1 2.6870 -3.6948 -0.7345 24 1 1.5335 -5.7606 -0.0753 25 1 -1.7542 -5.1787 2.9681 26 1 -1.2801 -3.5003 2.2082 27 1 -0.1460 -1.4150 1.5769 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261121762.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:48 Heat of formation + Delta-G solvation = -211.115395 kcal Electronic energy + Delta-G solvation = -17833.079514 eV Core-core repulsion = 14332.429315 eV Total energy + Delta-G solvation = -3500.650199 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -51.05548 -48.57913 -48.54908 -39.94453 -37.90871 -35.53537 -32.42423 -31.30338 -29.76315 -26.91378 -24.24502 -23.04152 -21.95160 -19.67564 -19.52356 -19.32487 -19.14890 -17.69974 -17.01873 -16.14296 -15.73417 -15.42145 -15.30488 -15.14981 -14.98241 -14.73144 -14.70202 -14.58343 -14.40674 -13.94666 -13.65589 -13.51059 -12.84512 -12.74537 -12.57592 -12.11422 -11.83052 -11.38877 -11.20883 -11.06137 -9.44562 -9.34426 -8.70853 -6.41741 0.75651 1.10847 1.38070 1.43750 1.53355 1.84660 2.18351 2.59415 2.79687 2.99024 3.08039 3.52546 3.73743 4.01107 4.17662 4.38673 4.54259 4.98945 5.10127 5.27690 5.36587 5.62663 5.83215 6.02050 6.04992 6.30706 6.36370 6.62725 6.87236 6.95093 8.25792 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.044310 B = 0.006102 C = 0.005973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.753195 B = 4587.482986 C = 4686.766162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.494 4.494 8 H 0.079 0.921 9 C 0.088 3.912 10 C -0.246 4.246 11 C -0.061 4.061 12 C -0.269 4.269 13 C 0.152 3.848 14 H 0.154 0.846 15 O -0.538 6.538 16 C 0.419 3.581 17 F -0.190 7.190 18 F -0.185 7.185 19 F -0.183 7.183 20 C -0.076 4.076 21 C -0.193 4.193 22 H 0.291 0.709 23 H 0.102 0.898 24 H 0.126 0.874 25 H 0.391 0.609 26 H 0.113 0.887 27 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.157 -6.359 2.173 7.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.085 3.915 10 C -0.265 4.265 11 C -0.079 4.079 12 C -0.270 4.270 13 C 0.091 3.909 14 H 0.172 0.828 15 O -0.345 6.345 16 C 0.365 3.635 17 F -0.172 7.172 18 F -0.166 7.166 19 F -0.165 7.165 20 C -0.095 4.095 21 C -0.213 4.213 22 H 0.101 0.899 23 H 0.121 0.879 24 H 0.144 0.856 25 H 0.242 0.758 26 H 0.131 0.869 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.023 -6.717 2.240 7.364 hybrid contribution -0.415 1.302 -0.549 1.473 sum -2.438 -5.415 1.691 6.174 Atomic orbital electron populations 1.69866 1.09097 1.30898 1.34427 1.26798 0.95470 1.04658 0.91030 0.85181 0.79251 0.75830 0.79431 1.18734 1.18957 1.18136 1.19950 0.98539 0.92508 1.41215 0.90252 1.18074 0.91578 0.93232 0.88608 1.21175 1.04786 0.92965 1.07609 1.20660 0.94196 0.97645 0.95445 1.19444 1.03059 0.93172 1.11347 1.21581 0.89574 0.99166 0.80542 0.82845 1.86586 1.65192 1.57645 1.25088 1.22069 0.85939 0.73586 0.81923 1.93146 1.70762 1.57016 1.96227 1.93155 1.88120 1.95716 1.39645 1.93163 1.83633 1.48415 1.91277 1.20599 0.98179 0.92175 0.98518 1.21238 1.00415 0.97079 1.02538 0.89854 0.87948 0.85601 0.75806 0.86934 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.61 10.97 21.83 0.24 -41.37 15 2 C 0.04 1.79 5.14 85.26 0.44 2.23 15 3 Si 0.98 36.87 29.60 68.60 2.03 38.90 15 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 5 H -0.27 -9.47 7.11 99.48 0.71 -8.77 15 6 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 7 C -0.49 -25.84 9.05 23.46 0.21 -25.63 15 8 H 0.08 3.99 7.91 -2.91 -0.02 3.97 15 9 C 0.09 4.59 5.57 -21.29 -0.12 4.47 15 10 C -0.25 -11.56 9.80 22.73 0.22 -11.34 15 11 C -0.06 -2.49 9.59 22.22 0.21 -2.28 15 12 C -0.27 -10.49 4.65 -19.67 -0.09 -10.58 15 13 C 0.15 4.73 3.22 29.85 0.10 4.83 15 14 H 0.15 4.05 8.05 -2.39 -0.02 4.03 15 15 O -0.54 -15.83 13.08 -148.98 -1.95 -17.78 15 16 C 0.42 13.26 2.84 71.98 0.20 13.47 15 17 F -0.19 -6.50 16.18 44.97 0.73 -5.77 15 18 F -0.18 -6.27 16.98 44.97 0.76 -5.50 15 19 F -0.18 -5.41 17.26 44.97 0.78 -4.63 15 20 C -0.08 -3.28 8.74 22.22 0.19 -3.09 15 21 C -0.19 -9.77 8.70 22.73 0.20 -9.57 15 22 H 0.29 13.31 8.30 -92.71 -0.77 12.54 15 23 H 0.10 4.54 8.06 -2.91 -0.02 4.51 15 24 H 0.13 4.21 8.06 -2.91 -0.02 4.18 15 25 H 0.39 9.87 7.02 -74.05 -0.52 9.35 15 26 H 0.11 4.15 6.59 -2.91 -0.02 4.13 15 27 H 0.10 5.47 6.18 -2.91 -0.02 5.45 15 Total: -1.00 -56.71 252.83 4.86 -51.85 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: 0.71 Total: 21.81 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 1.57 Total: -37.51 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.24 Total: -41.37 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -1.95 Total: -17.78 kcal Atomic # 9 Polarization: -18.17 SS G_CDS: 2.27 Total: -15.90 kcal Atomic # 14 Polarization: 36.87 SS G_CDS: 2.03 Total: 38.90 kcal Total: -56.71 4.86 -51.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121762.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.266 kcal (2) G-P(sol) polarization free energy of solvation -56.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds