Wall clock time and date at job start Mon Mar 30 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86796 * 120.00022 * 2 1 4 4 H 1.48502 * 109.47220 * 240.00088 * 3 2 1 5 5 H 1.48502 * 109.47103 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47348 * 119.99704 * 3 2 1 7 7 C 1.39941 * 120.00128 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00225 * 162.31091 * 7 2 1 9 9 C 1.41397 * 120.00269 * 342.03833 * 7 2 1 10 10 C 1.40714 * 120.24028 * 335.58952 * 9 7 2 11 11 C 1.37622 * 119.74431 * 179.73992 * 10 9 7 12 12 C 1.38634 * 120.24531 * 0.53562 * 11 10 9 13 13 C 1.50701 * 119.74667 * 179.69819 * 12 11 10 14 14 H 1.08994 * 109.47107 * 160.01895 * 13 12 11 15 15 O 1.42896 * 109.47273 * 40.01454 * 13 12 11 16 16 C 1.53003 * 109.46737 * 280.01837 * 13 12 11 17 17 F 1.39901 * 109.47425 * 60.00075 * 16 13 12 18 18 F 1.39899 * 109.46927 * 180.02562 * 16 13 12 19 19 F 1.39901 * 109.47130 * 299.99947 * 16 13 12 20 20 C 1.38628 * 120.50406 * 359.71138 * 12 11 10 21 21 C 1.37624 * 120.24923 * 0.02976 * 20 12 11 22 22 H 0.97009 * 120.00125 * 0.02562 * 1 2 3 23 23 H 1.08006 * 120.12771 * 359.96969 * 10 9 7 24 24 H 1.08000 * 119.87305 * 180.27024 * 11 10 9 25 25 H 0.96693 * 114.00710 * 299.99897 * 15 13 12 26 26 H 1.08002 * 119.87821 * 179.97438 * 20 12 11 27 27 H 1.07997 * 120.12719 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0496 -1.2342 -0.2836 9 6 1.3527 -2.4065 0.3787 10 6 0.2231 -2.3605 1.2165 11 6 -0.4099 -3.5291 1.5739 12 6 0.0679 -4.7490 1.1206 13 6 -0.6300 -6.0221 1.5244 14 1 -0.3663 -6.8177 0.8275 15 8 -2.0441 -5.8181 1.5015 16 6 -0.1944 -6.4164 2.9371 17 9 -0.5328 -5.3953 3.8315 18 9 -0.8418 -7.5986 3.3118 19 9 1.1901 -6.6162 2.9596 20 6 1.1830 -4.8066 0.2989 21 6 1.8288 -3.6503 -0.0754 22 1 -0.4851 0.8401 -0.0004 23 1 -0.1478 -1.4115 1.5748 24 1 -1.2797 -3.4959 2.2133 25 1 -2.3510 -5.1227 2.0992 26 1 1.5469 -5.7624 -0.0480 27 1 2.6975 -3.6975 -0.7153 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261121765.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:51 Heat of formation + Delta-G solvation = -195.838434 kcal Electronic energy + Delta-G solvation = -17806.161477 eV Core-core repulsion = 14306.173736 eV Total energy + Delta-G solvation = -3499.987741 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.69492 -47.22635 -47.17570 -38.29996 -36.37905 -33.79873 -30.77304 -29.53065 -28.17728 -25.21800 -22.74370 -21.28064 -20.28702 -18.28757 -18.13946 -17.85244 -17.45551 -16.10803 -15.36638 -14.65030 -14.09100 -14.06228 -13.88438 -13.62127 -13.57822 -13.35925 -13.34224 -12.94600 -12.85099 -12.36894 -12.05517 -11.47044 -11.44324 -11.18608 -10.82624 -10.62935 -10.22734 -9.68755 -9.54287 -9.28349 -7.66105 -7.55603 -6.94287 -4.54583 2.45811 2.91779 2.97161 2.98603 3.02753 3.27063 3.80496 4.14790 4.19893 4.44366 4.54455 4.88625 5.49817 5.54017 5.62085 6.07345 6.16816 6.76995 6.89465 7.05887 7.15472 7.41095 7.57071 7.62641 7.84598 7.87650 8.10210 8.44990 8.70588 8.77636 9.99546 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.044862 B = 0.006022 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.992157 B = 4648.136508 C = 4768.378714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.076 3.924 3 Si 0.912 3.088 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.120 3.880 10 C -0.167 4.167 11 C -0.074 4.074 12 C -0.278 4.278 13 C 0.144 3.856 14 H 0.128 0.872 15 O -0.538 6.538 16 C 0.415 3.585 17 F -0.184 7.184 18 F -0.192 7.192 19 F -0.179 7.179 20 C -0.058 4.058 21 C -0.229 4.229 22 H 0.285 0.715 23 H 0.121 0.879 24 H 0.088 0.912 25 H 0.381 0.619 26 H 0.092 0.908 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 -5.504 3.406 6.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.186 4.186 11 C -0.093 4.093 12 C -0.280 4.280 13 C 0.083 3.917 14 H 0.146 0.854 15 O -0.344 6.344 16 C 0.361 3.639 17 F -0.165 7.165 18 F -0.174 7.174 19 F -0.161 7.161 20 C -0.077 4.077 21 C -0.248 4.248 22 H 0.096 0.904 23 H 0.138 0.862 24 H 0.106 0.894 25 H 0.230 0.770 26 H 0.110 0.890 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.177 -5.817 2.986 6.644 hybrid contribution 0.417 1.118 0.661 1.364 sum -0.760 -4.699 3.646 5.996 Atomic orbital electron populations 1.69807 1.07717 1.29811 1.33354 1.25987 0.94785 1.01631 0.92002 0.86304 0.80174 0.79793 0.80176 1.18826 1.20164 1.18627 1.19681 0.98272 0.91265 1.39036 0.90066 1.17700 0.90749 0.92123 0.87707 1.21259 0.99428 0.96658 1.01232 1.20323 0.97907 0.92526 0.98535 1.19047 1.03675 0.92019 1.13262 1.21576 0.82261 0.99323 0.88492 0.85446 1.86589 1.19694 1.60675 1.67490 1.22168 0.75428 0.74266 0.92038 1.93140 1.92036 1.59859 1.71502 1.93143 1.81610 1.49357 1.93261 1.93157 1.31017 1.94903 1.97002 1.20279 0.94256 0.96891 0.96265 1.20945 1.03958 0.92624 1.07274 0.90439 0.86152 0.89368 0.76996 0.88977 0.88515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.29 10.96 55.55 0.61 -18.68 15 2 C 0.08 1.81 5.14 -17.35 -0.09 1.72 15 3 Si 0.91 17.79 29.59 -169.99 -5.03 12.76 15 4 H -0.26 -5.09 7.11 56.52 0.40 -4.68 15 5 H -0.28 -5.26 7.11 56.52 0.40 -4.86 15 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 15 7 C -0.45 -11.51 9.05 -37.74 -0.34 -11.85 15 8 H 0.08 1.97 7.91 -52.49 -0.41 1.55 15 9 C 0.12 3.07 5.57 -106.83 -0.60 2.47 15 10 C -0.17 -4.13 8.70 -38.87 -0.34 -4.47 15 11 C -0.07 -1.63 8.52 -39.66 -0.34 -1.97 15 12 C -0.28 -5.75 4.68 -104.33 -0.49 -6.23 15 13 C 0.14 2.49 3.24 -27.88 -0.09 2.40 15 14 H 0.13 1.99 7.99 -51.93 -0.41 1.57 15 15 O -0.54 -9.00 13.13 -35.23 -0.46 -9.47 15 16 C 0.42 7.02 2.84 37.16 0.11 7.13 15 17 F -0.18 -3.22 15.87 2.25 0.04 -3.18 15 18 F -0.19 -3.10 17.26 2.25 0.04 -3.06 15 19 F -0.18 -3.18 17.02 2.25 0.04 -3.14 15 20 C -0.06 -1.24 9.64 -39.66 -0.38 -1.63 15 21 C -0.23 -5.37 9.80 -38.87 -0.38 -5.75 15 22 H 0.28 6.37 8.30 -40.82 -0.34 6.03 15 23 H 0.12 3.07 6.16 -52.48 -0.32 2.75 15 24 H 0.09 1.71 6.62 -52.49 -0.35 1.36 15 25 H 0.38 5.49 7.12 45.56 0.32 5.82 15 26 H 0.09 1.69 8.03 -52.49 -0.42 1.27 15 27 H 0.10 2.12 8.06 -52.49 -0.42 1.70 15 LS Contribution 252.52 15.07 3.81 3.81 Total: -1.00 -26.28 252.52 -5.06 -31.34 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -1.15 Total: 7.81 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -2.94 Total: -18.18 kcal Atomic # 7 Polarization: -19.29 SS G_CDS: 0.61 Total: -18.68 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.46 Total: -9.47 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 0.11 Total: -9.38 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -26.28 -5.06 -31.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261121765.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.500 kcal (2) G-P(sol) polarization free energy of solvation -26.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds