Wall clock time and date at job start Mon Mar 30 2020 06:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48499 * 109.46799 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47436 * 299.99931 * 3 2 1 6 6 H 1.48494 * 109.46965 * 60.00312 * 3 2 1 7 7 C 1.39942 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99727 * 197.72346 * 7 2 1 9 9 C 1.41393 * 120.00335 * 17.71949 * 7 2 1 10 10 C 1.40739 * 120.24351 * 24.53938 * 9 7 2 11 11 C 1.37595 * 119.74298 * 180.23772 * 10 9 7 12 12 C 1.38660 * 120.25030 * 359.77755 * 11 10 9 13 13 C 1.38607 * 120.50049 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.87421 * 179.97438 * 13 12 11 15 15 H 1.09007 * 109.47232 * 204.98218 * 14 13 12 16 16 O 1.42903 * 109.47280 * 324.97538 * 14 13 12 17 17 C 1.52992 * 109.47117 * 84.97966 * 14 13 12 18 18 F 1.39903 * 109.47487 * 60.00266 * 17 14 13 19 19 F 1.39906 * 109.47019 * 180.02562 * 17 14 13 20 20 F 1.39902 * 109.47241 * 299.99883 * 17 14 13 21 21 C 1.37638 * 120.25217 * 359.97438 * 13 12 11 22 22 H 0.97003 * 119.99995 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.12562 * 359.97438 * 10 9 7 24 24 H 1.08005 * 119.87254 * 179.76378 * 11 10 9 25 25 H 1.07996 * 119.74361 * 179.97438 * 12 11 10 26 26 H 0.96701 * 113.99408 * 59.99682 * 16 14 13 27 27 H 1.07996 * 120.13522 * 180.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3965 -1.2125 6 1 1.8835 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0495 -1.2343 0.2842 9 6 1.3513 -2.4073 -0.3737 10 6 0.2200 -2.3633 -1.2099 11 6 -0.4139 -3.5324 -1.5627 12 6 0.0604 -4.7509 -1.1014 13 6 1.1767 -4.8066 -0.2816 14 6 1.6798 -6.1385 0.2121 15 1 2.2326 -5.9966 1.1408 16 8 0.5713 -7.0095 0.4461 17 6 2.6015 -6.7575 -0.8405 18 9 3.6868 -5.9049 -1.0695 19 9 3.0681 -7.9944 -0.3824 20 9 1.8920 -6.9397 -2.0324 21 6 1.8274 -3.6499 0.0833 22 1 -0.4850 0.8401 0.0004 23 1 -0.1515 -1.4152 -1.5698 24 1 -1.2845 -3.5008 -2.2011 25 1 -0.4437 -5.6635 -1.3830 26 1 0.0333 -7.1808 -0.3389 27 1 2.6973 -3.6955 0.7217 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126185.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:25 Heat of formation + Delta-G solvation = -209.649994 kcal Electronic energy + Delta-G solvation = -17847.205653 eV Core-core repulsion = 14346.618998 eV Total energy + Delta-G solvation = -3500.586655 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.11250 -48.62066 -48.60569 -40.01568 -37.95954 -35.48070 -32.45476 -31.77356 -28.96264 -27.23168 -24.64030 -22.73746 -22.13842 -19.85214 -19.55372 -19.41945 -18.90049 -17.52612 -16.79974 -16.32454 -16.15604 -15.46231 -15.34365 -15.16281 -15.02630 -14.77033 -14.74441 -14.66080 -14.43446 -14.08224 -13.63952 -13.08044 -12.94812 -12.83437 -12.34975 -12.20069 -12.05416 -11.38478 -11.21671 -11.05581 -9.45074 -9.35008 -8.66832 -6.37630 0.77368 0.95154 1.39111 1.47874 1.53785 1.77378 2.20341 2.61987 2.70649 2.89965 2.98358 3.43835 3.69776 3.86500 4.09491 4.50806 4.56604 4.98875 5.07438 5.23668 5.38252 5.57888 5.85461 6.04415 6.05770 6.26636 6.35443 6.64196 6.90189 6.96363 8.30896 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.038413 B = 0.006506 C = 0.006011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.743616 B = 4302.772879 C = 4656.764917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.498 4.498 8 H 0.076 0.924 9 C 0.075 3.925 10 C -0.179 4.179 11 C -0.109 4.109 12 C -0.211 4.211 13 C -0.115 4.115 14 C 0.134 3.866 15 H 0.151 0.849 16 O -0.532 6.532 17 C 0.428 3.572 18 F -0.184 7.184 19 F -0.179 7.179 20 F -0.182 7.182 21 C -0.211 4.211 22 H 0.289 0.711 23 H 0.103 0.897 24 H 0.116 0.884 25 H 0.125 0.875 26 H 0.395 0.605 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.014 -7.808 -1.365 8.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.527 4.527 8 H 0.095 0.905 9 C 0.073 3.927 10 C -0.199 4.199 11 C -0.127 4.127 12 C -0.230 4.230 13 C -0.115 4.115 14 C 0.073 3.927 15 H 0.168 0.832 16 O -0.340 6.340 17 C 0.373 3.627 18 F -0.165 7.165 19 F -0.161 7.161 20 F -0.164 7.164 21 C -0.230 4.230 22 H 0.099 0.901 23 H 0.121 0.879 24 H 0.134 0.866 25 H 0.143 0.857 26 H 0.247 0.753 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.054 -7.684 -0.778 7.992 hybrid contribution 0.180 0.812 -0.746 1.118 sum 2.235 -6.872 -1.525 7.386 Atomic orbital electron populations 1.69862 1.08965 1.30588 1.35582 1.26724 0.95465 1.04462 0.91184 0.85178 0.79462 0.76293 0.78923 1.18214 1.18942 1.19075 1.19851 0.98357 0.92414 1.42099 0.90537 1.17947 0.92141 0.92988 0.89614 1.21420 0.99787 0.97414 1.01250 1.20958 0.99207 0.92761 0.99819 1.20436 0.99893 0.97380 1.05339 1.19675 0.98145 0.93000 1.00719 1.21796 0.87173 0.86789 0.96933 0.83171 1.86626 1.40514 1.66668 1.40179 1.21620 0.81105 0.76579 0.83371 1.93186 1.57395 1.70785 1.95155 1.93180 1.89629 1.44626 1.88639 1.93156 1.78126 1.95338 1.49755 1.20957 1.03412 0.92250 1.06418 0.90057 0.87923 0.86565 0.85690 0.75343 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.24 10.95 21.83 0.24 -42.00 15 2 C 0.04 1.82 5.14 85.26 0.44 2.25 15 3 Si 0.98 37.54 29.60 68.60 2.03 39.57 15 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 5 H -0.26 -9.76 7.11 99.48 0.71 -9.05 15 6 H -0.27 -9.75 7.11 99.48 0.71 -9.05 15 7 C -0.50 -26.32 9.05 23.46 0.21 -26.11 15 8 H 0.08 3.92 7.91 -2.91 -0.02 3.89 15 9 C 0.08 3.96 5.57 -21.29 -0.12 3.84 15 10 C -0.18 -9.15 8.70 22.73 0.20 -8.95 15 11 C -0.11 -4.78 10.02 22.22 0.22 -4.56 15 12 C -0.21 -8.31 8.79 22.46 0.20 -8.11 15 13 C -0.11 -4.59 4.62 -19.92 -0.09 -4.68 15 14 C 0.13 4.26 3.22 29.85 0.10 4.35 15 15 H 0.15 4.38 8.05 -2.38 -0.02 4.37 15 16 O -0.53 -15.26 13.08 -148.98 -1.95 -17.21 15 17 C 0.43 13.17 2.84 71.98 0.20 13.37 15 18 F -0.18 -6.29 16.97 44.97 0.76 -5.52 15 19 F -0.18 -5.15 17.26 44.97 0.78 -4.37 15 20 F -0.18 -5.64 16.19 44.97 0.73 -4.91 15 21 C -0.21 -9.80 9.36 22.73 0.21 -9.59 15 22 H 0.29 13.32 8.30 -92.71 -0.77 12.55 15 23 H 0.10 5.50 6.16 -2.91 -0.02 5.49 15 24 H 0.12 4.42 8.06 -2.91 -0.02 4.40 15 25 H 0.13 3.94 6.59 -2.91 -0.02 3.92 15 26 H 0.39 9.01 7.02 -74.06 -0.52 8.49 15 27 H 0.10 4.54 8.06 -2.91 -0.02 4.52 15 Total: -1.00 -56.98 252.84 4.87 -52.12 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.71 Total: 20.50 kcal Atomic # 6 Polarization: -39.74 SS G_CDS: 1.57 Total: -38.17 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.24 Total: -42.00 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -1.95 Total: -17.21 kcal Atomic # 9 Polarization: -17.07 SS G_CDS: 2.27 Total: -14.81 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -56.98 4.87 -52.12 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126185.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.535 kcal (2) G-P(sol) polarization free energy of solvation -56.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds