Wall clock time and date at job start Mon Mar 30 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86802 * 119.99865 * 2 1 4 4 H 1.48503 * 109.46950 * 239.99944 * 3 2 1 5 5 H 1.48494 * 109.47137 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46935 * 120.00132 * 3 2 1 7 7 C 1.39942 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99389 * 197.71580 * 7 2 1 9 9 C 1.41397 * 120.00280 * 17.70927 * 7 2 1 10 10 C 1.40735 * 120.24356 * 24.53968 * 9 7 2 11 11 C 1.37593 * 119.74327 * 180.27179 * 10 9 7 12 12 C 1.38651 * 120.24973 * 359.75243 * 11 10 9 13 13 C 1.38611 * 120.50280 * 359.97296 * 12 11 10 14 14 C 1.50703 * 119.87730 * 180.02562 * 13 12 11 15 15 H 1.09001 * 109.47266 * 160.01969 * 14 13 12 16 16 O 1.42898 * 109.47215 * 40.01891 * 14 13 12 17 17 C 1.53000 * 109.46860 * 280.01851 * 14 13 12 18 18 F 1.39900 * 109.47441 * 59.99935 * 17 14 13 19 19 F 1.39901 * 109.47316 * 180.02562 * 17 14 13 20 20 F 1.39903 * 109.47257 * 299.99915 * 17 14 13 21 21 C 1.37641 * 120.24956 * 0.02562 * 13 12 11 22 22 H 0.97003 * 119.99995 * 359.97438 * 1 2 3 23 23 H 1.07999 * 120.12456 * 0.02562 * 10 9 7 24 24 H 1.07997 * 119.87597 * 179.71738 * 11 10 9 25 25 H 1.08003 * 119.75173 * 179.97438 * 12 11 10 26 26 H 0.96699 * 113.99808 * 300.00102 * 16 14 13 27 27 H 1.07996 * 120.13155 * 179.97438 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0496 -1.2342 0.2841 9 6 1.3512 -2.4073 -0.3736 10 6 0.2199 -2.3634 -1.2095 11 6 -0.4146 -3.5325 -1.5615 12 6 0.0597 -4.7509 -1.1001 13 6 1.1764 -4.8065 -0.2809 14 6 1.6802 -6.1386 0.2121 15 1 2.7198 -6.0408 0.5248 16 8 1.5877 -7.1017 -0.8394 17 6 0.8314 -6.5970 1.3997 18 9 -0.5029 -6.7225 0.9985 19 9 1.2994 -7.8332 1.8578 20 9 0.9220 -5.6540 2.4293 21 6 1.8271 -3.6498 0.0840 22 1 -0.4850 0.8401 0.0004 23 1 -0.1512 -1.4154 -1.5701 24 1 -1.2856 -3.5009 -2.1992 25 1 -0.4448 -5.6636 -1.3810 26 1 0.6888 -7.2404 -1.1678 27 1 2.6967 -3.6953 0.7227 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126186.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:27 Heat of formation + Delta-G solvation = -209.944049 kcal Electronic energy + Delta-G solvation = -17868.683931 eV Core-core repulsion = 14368.084525 eV Total energy + Delta-G solvation = -3500.599406 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.11790 -48.63033 -48.60904 -40.00724 -37.95368 -35.48208 -32.44571 -31.78021 -28.96285 -27.23071 -24.63840 -22.74611 -22.14367 -19.83497 -19.55562 -19.42951 -18.90194 -17.49923 -16.80049 -16.34999 -16.15199 -15.46714 -15.34983 -15.15567 -15.03103 -14.77639 -14.74797 -14.65748 -14.44672 -14.04165 -13.55190 -13.33230 -12.89694 -12.59791 -12.50134 -12.26332 -11.98760 -11.38890 -11.21366 -11.04576 -9.45320 -9.35507 -8.66432 -6.37498 0.77636 0.96016 1.38974 1.49032 1.52619 1.76884 2.20364 2.62551 2.70147 2.90005 2.98239 3.45481 3.73057 3.82515 4.09102 4.50901 4.56540 4.98859 5.07442 5.23615 5.38174 5.57923 5.85403 6.04093 6.06094 6.26968 6.34902 6.64002 6.90060 6.96471 8.31034 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.038013 B = 0.006501 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.416664 B = 4305.905053 C = 4531.805850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.981 3.019 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.078 0.922 9 C 0.076 3.924 10 C -0.179 4.179 11 C -0.109 4.109 12 C -0.213 4.213 13 C -0.115 4.115 14 C 0.136 3.864 15 H 0.152 0.848 16 O -0.531 6.531 17 C 0.426 3.574 18 F -0.183 7.183 19 F -0.179 7.179 20 F -0.186 7.186 21 C -0.210 4.210 22 H 0.289 0.711 23 H 0.103 0.897 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.395 0.605 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.882 -7.667 0.178 7.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.096 0.904 9 C 0.073 3.927 10 C -0.199 4.199 11 C -0.127 4.127 12 C -0.232 4.232 13 C -0.115 4.115 14 C 0.074 3.926 15 H 0.170 0.830 16 O -0.339 6.339 17 C 0.371 3.629 18 F -0.164 7.164 19 F -0.161 7.161 20 F -0.167 7.167 21 C -0.230 4.230 22 H 0.099 0.901 23 H 0.121 0.879 24 H 0.134 0.866 25 H 0.142 0.858 26 H 0.246 0.754 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.275 -7.573 0.311 7.686 hybrid contribution -0.652 0.877 0.303 1.134 sum 0.623 -6.696 0.614 6.753 Atomic orbital electron populations 1.69858 1.09019 1.30710 1.35494 1.26740 0.95458 1.04515 0.91160 0.85261 0.78790 0.75657 0.80085 1.18433 1.19319 1.18392 1.19823 0.98452 0.92401 1.42157 0.90360 1.17941 0.92144 0.92986 0.89598 1.21419 0.99776 0.97396 1.01299 1.20952 0.99152 0.92775 0.99864 1.20447 0.99482 0.97365 1.05858 1.19671 0.97873 0.92985 1.00995 1.21802 1.00362 0.86533 0.83861 0.83025 1.86619 1.35855 1.59748 1.51646 1.21688 0.80013 0.75054 0.86109 1.93153 1.37101 1.95781 1.90397 1.93177 1.88264 1.44276 1.90338 1.93190 1.96068 1.65383 1.62068 1.20971 1.03777 0.92223 1.06023 0.90062 0.87923 0.86605 0.85770 0.75353 0.87722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.54 10.95 21.83 0.24 -42.30 15 2 C 0.04 1.80 5.14 85.26 0.44 2.24 15 3 Si 0.98 37.48 29.59 68.60 2.03 39.51 15 4 H -0.26 -9.71 7.11 99.48 0.71 -9.00 15 5 H -0.27 -9.74 7.11 99.48 0.71 -9.04 15 6 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 7 C -0.50 -26.31 9.05 23.46 0.21 -26.10 15 8 H 0.08 3.95 7.91 -2.91 -0.02 3.93 15 9 C 0.08 3.97 5.57 -21.29 -0.12 3.85 15 10 C -0.18 -9.16 8.70 22.73 0.20 -8.96 15 11 C -0.11 -4.79 10.02 22.22 0.22 -4.57 15 12 C -0.21 -8.37 8.57 22.46 0.19 -8.18 15 13 C -0.11 -4.58 4.64 -19.92 -0.09 -4.67 15 14 C 0.14 4.30 3.24 29.85 0.10 4.39 15 15 H 0.15 4.37 7.99 -2.39 -0.02 4.35 15 16 O -0.53 -15.02 13.13 -148.98 -1.96 -16.97 15 17 C 0.43 13.45 2.84 71.98 0.20 13.65 15 18 F -0.18 -5.83 15.87 44.97 0.71 -5.12 15 19 F -0.18 -5.23 17.26 44.97 0.78 -4.45 15 20 F -0.19 -6.65 17.02 44.97 0.77 -5.88 15 21 C -0.21 -9.77 9.41 22.73 0.21 -9.56 15 22 H 0.29 13.49 8.30 -92.71 -0.77 12.72 15 23 H 0.10 5.51 6.16 -2.91 -0.02 5.49 15 24 H 0.12 4.42 8.06 -2.91 -0.02 4.40 15 25 H 0.12 3.95 6.63 -2.91 -0.02 3.93 15 26 H 0.39 8.92 7.13 -74.06 -0.53 8.40 15 27 H 0.10 4.55 8.03 -2.91 -0.02 4.53 15 Total: -1.00 -57.16 252.55 4.83 -52.32 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.70 Total: 20.80 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 1.57 Total: -37.91 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.24 Total: -42.30 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -1.96 Total: -16.97 kcal Atomic # 9 Polarization: -17.71 SS G_CDS: 2.26 Total: -15.45 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -57.16 4.83 -52.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126186.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.621 kcal (2) G-P(sol) polarization free energy of solvation -57.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds