Wall clock time and date at job start Mon Mar 30 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86801 * 120.00169 * 2 1 4 4 H 1.48494 * 109.47287 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47047 * 300.00640 * 3 2 1 6 6 H 1.48502 * 109.46685 * 59.99958 * 3 2 1 7 7 C 1.39948 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99875 * 164.00912 * 7 2 1 9 9 C 1.41396 * 120.00107 * 344.00960 * 7 2 1 10 10 C 1.40731 * 120.24150 * 333.74833 * 9 7 2 11 11 C 1.37598 * 119.74216 * 179.97438 * 10 9 7 12 12 C 1.38661 * 120.25132 * 0.02562 * 11 10 9 13 13 C 1.38619 * 120.49767 * 359.67393 * 12 11 10 14 14 C 1.37644 * 120.24576 * 0.60280 * 13 12 11 15 15 C 1.50700 * 120.12579 * 179.69949 * 14 13 12 16 16 H 1.08998 * 109.46876 * 214.73084 * 15 14 13 17 17 O 1.42910 * 109.47068 * 334.72998 * 15 14 13 18 18 C 1.52994 * 109.46862 * 94.72676 * 15 14 13 19 19 F 1.39900 * 109.47503 * 299.99602 * 18 15 14 20 20 F 1.39892 * 109.47442 * 60.00280 * 18 15 14 21 21 F 1.39901 * 109.46972 * 180.02562 * 18 15 14 22 22 H 0.96998 * 120.00190 * 0.02562 * 1 2 3 23 23 H 1.07996 * 120.13231 * 359.94448 * 10 9 7 24 24 H 1.08006 * 119.87737 * 179.97438 * 11 10 9 25 25 H 1.07992 * 119.75103 * 179.97438 * 12 11 10 26 26 H 1.07999 * 119.87382 * 180.30362 * 13 12 11 27 27 H 0.96701 * 113.99914 * 59.99847 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7022 1.3464 -0.0006 5 1 1.8834 2.3965 -1.2124 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0566 -1.2300 -0.2582 9 6 1.3420 -2.4130 0.3362 10 6 0.2104 -2.3855 1.1725 11 6 -0.4300 -3.5603 1.4932 12 6 0.0358 -4.7681 0.9962 13 6 1.1457 -4.8064 0.1667 14 6 1.8055 -3.6441 -0.1627 15 6 3.0159 -3.6896 -1.0593 16 1 3.7270 -2.9242 -0.7486 17 8 3.6301 -4.9766 -0.9656 18 6 2.5890 -3.4324 -2.5058 19 9 1.6763 -4.4149 -2.9044 20 9 1.9878 -2.1726 -2.5976 21 9 3.7126 -3.4751 -3.3382 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1536 -1.4461 1.5614 24 1 -1.2984 -3.5418 2.1352 25 1 -0.4728 -5.6854 1.2535 26 1 1.4970 -5.7522 -0.2186 27 1 3.0535 -5.7075 -1.2272 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261167097.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:53 Heat of formation + Delta-G solvation = -206.103335 kcal Electronic energy + Delta-G solvation = -18534.451890 eV Core-core repulsion = 15034.019030 eV Total energy + Delta-G solvation = -3500.432860 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.95156 -48.50931 -48.37981 -40.00389 -37.73283 -35.52902 -32.65037 -31.25242 -29.12508 -27.10601 -24.54726 -22.84528 -21.74924 -19.67535 -19.40838 -19.16330 -19.10740 -17.60003 -16.94238 -16.12961 -15.85736 -15.33701 -15.16935 -15.14814 -14.88656 -14.60563 -14.57852 -14.46855 -14.33302 -14.16354 -13.55125 -13.14359 -12.87444 -12.74092 -12.45722 -12.13295 -11.80877 -11.41669 -11.08356 -11.03315 -9.37763 -9.30444 -8.64804 -6.35809 0.81808 1.04613 1.40005 1.51412 1.53460 1.94102 2.20419 2.74616 2.86295 2.99504 3.16450 3.60690 3.79625 4.10517 4.30682 4.46446 4.62017 4.89028 5.16735 5.28677 5.42941 5.64863 5.91950 6.02083 6.15474 6.29626 6.43431 6.64991 6.89906 6.98666 8.31970 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020105 B = 0.012371 C = 0.008798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.359634 B = 2262.776583 C = 3181.857957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.042 3.958 3 Si 0.968 3.032 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.264 1.264 7 C -0.476 4.476 8 H 0.081 0.919 9 C 0.107 3.893 10 C -0.189 4.189 11 C -0.102 4.102 12 C -0.243 4.243 13 C -0.068 4.068 14 C -0.269 4.269 15 C 0.155 3.845 16 H 0.133 0.867 17 O -0.537 6.537 18 C 0.421 3.579 19 F -0.189 7.189 20 F -0.176 7.176 21 F -0.188 7.188 22 H 0.288 0.712 23 H 0.103 0.897 24 H 0.111 0.889 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.192 -3.882 -1.904 5.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.174 4.174 3 Si 0.790 3.210 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.505 4.505 8 H 0.099 0.901 9 C 0.104 3.896 10 C -0.208 4.208 11 C -0.121 4.121 12 C -0.262 4.262 13 C -0.086 4.086 14 C -0.271 4.271 15 C 0.094 3.906 16 H 0.150 0.850 17 O -0.345 6.345 18 C 0.367 3.633 19 F -0.171 7.171 20 F -0.157 7.157 21 F -0.170 7.170 22 H 0.098 0.902 23 H 0.121 0.879 24 H 0.129 0.871 25 H 0.139 0.861 26 H 0.143 0.857 27 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.478 -3.382 -1.757 5.160 hybrid contribution -0.601 0.662 -0.507 1.028 sum 2.877 -2.720 -2.264 4.561 Atomic orbital electron populations 1.69861 1.08884 1.30455 1.35107 1.26615 0.95369 1.04205 0.91251 0.85346 0.79917 0.76979 0.78783 1.17752 1.19581 1.18878 1.19748 0.97436 0.91736 1.41603 0.90135 1.17636 0.91438 0.92102 0.88389 1.21342 1.00120 0.97179 1.02189 1.21068 0.98680 0.93208 0.99099 1.20740 1.01262 0.97180 1.07004 1.20597 0.94690 0.96506 0.96765 1.19906 1.02728 0.95217 1.09242 1.21337 0.95578 0.88076 0.85639 0.84959 1.86603 1.43267 1.14926 1.89707 1.22007 0.74814 0.74459 0.92058 1.93102 1.68617 1.62802 1.92547 1.93255 1.84071 1.41618 1.96755 1.93134 1.52272 1.96199 1.75398 0.90165 0.87901 0.87137 0.86061 0.85726 0.75884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.29 10.97 21.83 0.24 -41.05 15 2 C 0.04 2.01 5.17 85.26 0.44 2.45 15 3 Si 0.97 37.08 29.59 68.60 2.03 39.11 15 4 H -0.25 -9.45 7.11 99.48 0.71 -8.74 15 5 H -0.27 -10.19 7.11 99.48 0.71 -9.48 15 6 H -0.26 -9.73 7.11 99.48 0.71 -9.02 15 7 C -0.48 -23.74 6.78 23.46 0.16 -23.58 15 8 H 0.08 3.84 6.37 -2.91 -0.02 3.82 15 9 C 0.11 5.36 5.37 -21.29 -0.11 5.25 15 10 C -0.19 -9.48 8.68 22.73 0.20 -9.28 15 11 C -0.10 -4.50 10.02 22.22 0.22 -4.28 15 12 C -0.24 -9.78 10.05 22.46 0.23 -9.55 15 13 C -0.07 -2.69 9.23 22.22 0.21 -2.49 15 14 C -0.27 -11.86 4.73 -19.40 -0.09 -11.96 15 15 C 0.15 5.99 2.86 29.85 0.09 6.08 15 16 H 0.13 5.24 6.49 -2.39 -0.02 5.23 15 17 O -0.54 -17.81 12.94 -148.98 -1.93 -19.74 15 18 C 0.42 16.43 2.84 71.98 0.20 16.64 15 19 F -0.19 -7.13 16.59 44.97 0.75 -6.39 15 20 F -0.18 -7.95 15.13 44.97 0.68 -7.27 15 21 F -0.19 -6.83 17.26 44.97 0.78 -6.05 15 22 H 0.29 13.21 8.30 -92.71 -0.77 12.44 15 23 H 0.10 5.42 6.23 -2.91 -0.02 5.41 15 24 H 0.11 4.28 8.06 -2.91 -0.02 4.26 15 25 H 0.12 4.09 8.06 -2.91 -0.02 4.07 15 26 H 0.12 3.99 6.40 -2.91 -0.02 3.97 15 27 H 0.39 10.29 6.97 -74.06 -0.52 9.78 15 Total: -1.00 -55.19 246.40 4.80 -50.39 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.72 Total: 21.72 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 1.53 Total: -30.73 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 0.24 Total: -41.05 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -1.93 Total: -19.74 kcal Atomic # 9 Polarization: -21.91 SS G_CDS: 2.20 Total: -19.71 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Total: -55.19 4.80 -50.39 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167097.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.711 kcal (2) G-P(sol) polarization free energy of solvation -55.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds