Wall clock time and date at job start Mon Mar 30 2020 06:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86804 * 119.99806 * 2 1 4 4 H 1.48498 * 109.47325 * 270.00249 * 3 2 1 5 5 H 1.48505 * 109.46905 * 30.00437 * 3 2 1 6 6 H 1.48502 * 109.47103 * 150.00363 * 3 2 1 7 7 C 1.39938 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00173 * 195.20171 * 7 2 1 9 9 C 1.41396 * 120.00073 * 15.20554 * 7 2 1 10 10 C 1.40731 * 120.24656 * 25.49025 * 9 7 2 11 11 C 1.37599 * 119.74688 * 179.97438 * 10 9 7 12 12 C 1.38651 * 120.24662 * 359.97438 * 11 10 9 13 13 C 1.38617 * 120.50573 * 0.02562 * 12 11 10 14 14 C 1.37639 * 120.24485 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.12785 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.47642 * 144.99905 * 15 14 13 17 17 O 1.42903 * 109.47110 * 24.99238 * 15 14 13 18 18 C 1.53003 * 109.46912 * 264.99671 * 15 14 13 19 19 F 1.39900 * 109.47108 * 60.00001 * 18 15 14 20 20 F 1.39899 * 109.47063 * 179.97438 * 18 15 14 21 21 F 1.39896 * 109.47383 * 299.99761 * 18 15 14 22 22 H 0.96997 * 120.00028 * 359.97438 * 1 2 3 23 23 H 1.08005 * 120.12500 * 359.96073 * 10 9 7 24 24 H 1.07999 * 119.87546 * 180.02562 * 11 10 9 25 25 H 1.08005 * 119.74635 * 179.97438 * 12 11 10 26 26 H 1.07992 * 119.87653 * 180.27379 * 13 12 11 27 27 H 0.96704 * 114.00384 * 300.00113 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0466 -1.4000 5 1 1.4396 2.6527 0.7002 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0597 -1.2284 0.2447 9 6 1.3382 -2.4149 -0.3223 10 6 0.1874 -2.3908 -1.1321 11 6 -0.4560 -3.5677 -1.4391 12 6 0.0256 -4.7741 -0.9544 13 6 1.1582 -4.8098 -0.1559 14 6 1.8179 -3.6449 0.1640 15 6 3.0492 -3.6869 1.0318 16 1 3.7500 -2.9184 0.7057 17 8 3.6657 -4.9714 0.9221 18 6 2.6554 -3.4329 2.4883 19 9 1.7560 -4.4193 2.9070 20 9 3.7984 -3.4724 3.2941 21 9 2.0518 -2.1755 2.5959 22 1 -0.4850 0.8400 0.0004 23 1 -0.1893 -1.4521 -1.5109 24 1 -1.3390 -3.5517 -2.0608 25 1 -0.4860 -5.6930 -1.2001 26 1 1.5270 -5.7555 0.2125 27 1 3.0983 -5.7048 1.1964 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261167098.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:55 Heat of formation + Delta-G solvation = -190.605153 kcal Electronic energy + Delta-G solvation = -18531.815077 eV Core-core repulsion = 15032.054268 eV Total energy + Delta-G solvation = -3499.760809 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.32795 -46.92619 -46.69552 -38.32928 -36.15409 -33.77783 -30.97284 -29.49427 -27.46538 -25.33335 -22.90931 -21.07774 -20.05745 -18.08299 -17.78097 -17.49603 -17.42150 -15.91311 -15.28617 -14.49317 -14.20942 -13.73737 -13.52574 -13.48894 -13.27899 -12.96660 -12.89785 -12.82203 -12.65005 -12.54934 -11.81611 -11.46125 -11.23446 -11.10760 -10.76714 -10.54286 -10.17517 -9.71813 -9.38850 -9.29987 -7.62396 -7.52515 -6.88431 -4.53534 2.55404 2.76799 3.02121 3.05269 3.14752 3.57410 3.84436 4.40504 4.49245 4.61431 4.78197 5.20348 5.55434 5.75843 5.91280 6.06739 6.30587 6.54508 6.93239 7.07182 7.18847 7.39534 7.62258 7.73131 7.85715 7.93010 8.08437 8.43791 8.69988 8.76905 10.04872 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.020097 B = 0.012367 C = 0.008785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.888318 B = 2263.556130 C = 3186.402885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.080 3.920 3 Si 0.908 3.092 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.452 4.452 8 H 0.079 0.921 9 C 0.134 3.866 10 C -0.158 4.158 11 C -0.097 4.097 12 C -0.242 4.242 13 C -0.063 4.063 14 C -0.262 4.262 15 C 0.145 3.855 16 H 0.137 0.863 17 O -0.543 6.543 18 C 0.417 3.583 19 F -0.192 7.192 20 F -0.197 7.197 21 F -0.158 7.158 22 H 0.283 0.717 23 H 0.124 0.876 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -2.865 1.709 4.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.481 4.481 8 H 0.097 0.903 9 C 0.131 3.869 10 C -0.178 4.178 11 C -0.116 4.116 12 C -0.261 4.261 13 C -0.081 4.081 14 C -0.264 4.264 15 C 0.085 3.915 16 H 0.154 0.846 17 O -0.349 6.349 18 C 0.363 3.637 19 F -0.174 7.174 20 F -0.179 7.179 21 F -0.139 7.139 22 H 0.094 0.906 23 H 0.141 0.859 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.941 -2.334 1.554 4.064 hybrid contribution -0.360 0.507 0.570 0.843 sum 2.582 -1.827 2.124 3.810 Atomic orbital electron populations 1.69792 1.07593 1.29520 1.33993 1.25872 0.94758 1.01384 0.91927 0.86302 0.80658 0.80447 0.79420 1.19123 1.20115 1.18351 1.19554 0.96968 0.90899 1.40674 0.90300 1.17307 0.91034 0.90845 0.87687 1.21391 0.98555 0.96994 1.00820 1.20774 0.98286 0.93360 0.99139 1.20318 1.00761 0.96525 1.08497 1.20147 0.94990 0.95452 0.97487 1.19595 1.01454 0.95357 1.10029 1.21564 0.96558 0.87159 0.86245 0.84601 1.86604 1.44048 1.15320 1.88898 1.22064 0.74468 0.75067 0.92129 1.93100 1.69378 1.62855 1.92052 1.93118 1.51371 1.96295 1.77101 1.93286 1.83545 1.40509 1.96603 0.90595 0.85867 0.89140 0.89155 0.89255 0.77597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.34 10.87 55.55 0.60 -18.73 15 2 C 0.08 1.90 5.19 -17.34 -0.09 1.81 15 3 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 15 4 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 15 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 15 7 C -0.45 -11.12 6.80 -37.74 -0.26 -11.38 15 8 H 0.08 1.85 6.35 -52.48 -0.33 1.52 15 9 C 0.13 3.34 5.38 -106.82 -0.57 2.77 15 10 C -0.16 -3.92 8.69 -38.87 -0.34 -4.26 15 11 C -0.10 -2.19 10.02 -39.66 -0.40 -2.58 15 12 C -0.24 -5.18 10.05 -39.29 -0.39 -5.58 15 13 C -0.06 -1.33 9.25 -39.66 -0.37 -1.70 15 14 C -0.26 -5.94 4.73 -103.91 -0.49 -6.44 15 15 C 0.15 2.93 2.86 -27.88 -0.08 2.85 15 16 H 0.14 2.74 6.48 -51.93 -0.34 2.41 15 17 O -0.54 -9.76 12.93 -35.23 -0.46 -10.22 15 18 C 0.42 8.44 2.84 37.16 0.11 8.54 15 19 F -0.19 -3.82 16.60 2.25 0.04 -3.78 15 20 F -0.20 -3.75 17.26 2.25 0.04 -3.72 15 21 F -0.16 -3.60 15.14 2.25 0.03 -3.56 15 22 H 0.28 6.36 8.30 -40.82 -0.34 6.02 15 23 H 0.12 3.13 6.14 -52.48 -0.32 2.81 15 24 H 0.09 1.81 8.06 -52.49 -0.42 1.39 15 25 H 0.09 1.70 8.06 -52.48 -0.42 1.28 15 26 H 0.09 1.61 6.40 -52.49 -0.34 1.28 15 27 H 0.38 5.64 6.98 45.56 0.32 5.95 15 LS Contribution 246.26 15.07 3.71 3.71 Total: -1.00 -26.20 246.26 -4.93 -31.14 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -0.99 Total: 8.14 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.88 Total: -15.96 kcal Atomic # 7 Polarization: -19.34 SS G_CDS: 0.60 Total: -18.73 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.46 Total: -10.22 kcal Atomic # 9 Polarization: -11.17 SS G_CDS: 0.11 Total: -11.06 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -26.20 -4.93 -31.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261167098.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.469 kcal (2) G-P(sol) polarization free energy of solvation -26.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds