Wall clock time and date at job start Mon Mar 30 2020 06:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30850 * 1 3 3 Si 1.86810 * 119.99802 * 2 1 4 4 H 1.48505 * 109.46644 * 239.99863 * 3 2 1 5 5 H 1.48494 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47127 * 120.00136 * 3 2 1 7 7 C 1.40068 * 120.00432 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00273 * 179.97438 * 7 2 1 9 9 C 1.40065 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.39617 * 127.06265 * 359.67931 * 9 7 2 11 11 N 1.33015 * 107.46654 * 180.26114 * 10 9 7 12 12 C 1.31019 * 109.98061 * 0.02562 * 11 10 9 13 13 C 1.50694 * 125.17709 * 180.02562 * 12 11 10 14 14 F 1.39898 * 109.47327 * 10.78772 * 13 12 11 15 15 F 1.39898 * 109.47074 * 130.79274 * 13 12 11 16 16 F 1.39901 * 109.46795 * 250.78885 * 13 12 11 17 17 N 1.35080 * 109.64293 * 359.97438 * 12 11 10 18 18 C 1.46503 * 126.48221 * 179.97438 * 17 12 11 19 19 C 1.53002 * 117.49417 * 135.14271 * 18 17 12 20 20 C 1.52999 * 117.49675 * 66.48394 * 18 17 12 21 21 H 0.97001 * 120.00158 * 359.97438 * 1 2 3 22 22 H 1.08004 * 126.26743 * 0.22020 * 10 9 7 23 23 H 1.08998 * 115.54865 * 280.80906 * 18 17 12 24 24 H 1.09002 * 117.50028 * 0.02562 * 19 18 17 25 25 H 1.08997 * 117.49673 * 145.02016 * 19 18 17 26 26 H 1.09002 * 117.49753 * 214.97532 * 20 18 17 27 27 H 1.09003 * 117.49603 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 3.0963 1.6964 -1.2126 5 1 1.2774 2.7464 -0.0006 6 1 3.0962 1.6965 1.2124 7 6 2.0089 -1.2130 0.0005 8 1 3.0890 -1.2129 0.0001 9 6 1.3086 -2.4260 0.0005 10 6 -0.0769 -2.5977 0.0063 11 7 -0.3171 -3.9060 0.0098 12 6 0.8131 -4.5686 0.0072 13 6 0.9391 -6.0703 0.0093 14 9 -0.3138 -6.6437 -0.2326 15 9 1.8335 -6.4646 -0.9916 16 9 1.4146 -6.4966 1.2540 17 7 1.8483 -3.7008 0.0013 18 6 3.2726 -4.0439 -0.0026 19 6 4.1813 -3.2767 -0.9651 20 6 3.8283 -4.7392 -1.2470 21 1 -0.4850 0.8400 0.0004 22 1 -0.8181 -1.8120 0.0083 23 1 3.6897 -4.3306 0.9627 24 1 3.7196 -2.5164 -1.5951 25 1 5.1965 -3.0590 -0.6332 26 1 4.6114 -5.4832 -1.1004 27 1 3.1341 -4.9418 -2.0626 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261168446.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:19 Heat of formation + Delta-G solvation = -90.045000 kcal Electronic energy + Delta-G solvation = -18314.565642 eV Core-core repulsion = 14851.458200 eV Total energy + Delta-G solvation = -3463.107442 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.10116 -48.62753 -48.61446 -42.17175 -37.92601 -35.76467 -32.57268 -31.29682 -28.52226 -25.49137 -23.94429 -23.58829 -21.78979 -21.19524 -19.52353 -19.45735 -19.23486 -18.20717 -17.33325 -16.64178 -15.88561 -15.55285 -15.47589 -15.07022 -15.00875 -14.84045 -14.78611 -14.65591 -14.46463 -13.80300 -13.69325 -12.93906 -12.78954 -12.66298 -12.35707 -12.03762 -11.71218 -11.40753 -11.33460 -10.51188 -10.23867 -9.24844 -8.66205 -6.48186 1.08721 1.43129 1.53412 1.59526 1.63413 2.10520 2.29252 2.38684 2.67343 2.83013 3.24320 3.27852 3.53419 3.75097 3.88948 4.07994 4.65071 4.70048 4.85513 5.01931 5.05163 5.19863 5.47739 5.53764 5.75372 6.35430 6.58055 6.79477 6.92187 7.56491 8.30793 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.032134 B = 0.008543 C = 0.007159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.137603 B = 3276.609124 C = 3910.371573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.032 3.968 3 Si 1.007 2.993 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.452 4.452 8 H 0.099 0.901 9 C 0.198 3.802 10 C -0.160 4.160 11 N -0.456 5.456 12 C -0.044 4.044 13 C 0.580 3.420 14 F -0.171 7.171 15 F -0.169 7.169 16 F -0.179 7.179 17 N -0.456 5.456 18 C 0.028 3.972 19 C -0.149 4.149 20 C -0.156 4.156 21 H 0.293 0.707 22 H 0.181 0.819 23 H 0.129 0.871 24 H 0.087 0.913 25 H 0.139 0.861 26 H 0.137 0.863 27 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.053 -3.094 -1.089 9.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.185 4.185 3 Si 0.827 3.173 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.486 4.486 8 H 0.117 0.883 9 C 0.085 3.915 10 C -0.313 4.313 11 N -0.176 5.176 12 C -0.291 4.291 13 C 0.524 3.476 14 F -0.152 7.152 15 F -0.151 7.151 16 F -0.161 7.161 17 N -0.149 5.149 18 C -0.076 4.076 19 C -0.187 4.187 20 C -0.194 4.194 21 H 0.104 0.896 22 H 0.197 0.803 23 H 0.147 0.853 24 H 0.106 0.894 25 H 0.157 0.843 26 H 0.155 0.845 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.154 -3.548 -1.085 8.958 hybrid contribution 0.411 0.681 0.113 0.804 sum 8.565 -2.866 -0.971 9.084 Atomic orbital electron populations 1.69648 1.09252 1.30951 1.34671 1.26909 0.95679 1.04740 0.91168 0.84853 0.78203 0.74010 0.80268 1.17861 1.19453 1.18113 1.18992 0.95491 0.88051 1.46063 0.88286 1.19492 0.92734 0.83798 0.95517 1.23544 0.95331 0.90321 1.22140 1.69239 1.26514 1.07662 1.14162 1.21547 0.85841 0.90913 1.30793 1.16350 0.73379 0.84239 0.73628 1.93140 1.42076 1.85844 1.94187 1.93164 1.68471 1.92075 1.61358 1.93168 1.88509 1.91273 1.43139 1.44114 1.04592 1.04930 1.61311 1.22023 0.78932 1.09434 0.97192 1.23345 1.00206 0.94897 1.00203 1.23456 1.02806 0.96436 0.96656 0.89559 0.80262 0.85324 0.89416 0.84325 0.84467 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.62 10.35 21.85 0.23 -40.39 15 2 C 0.03 1.47 5.50 85.28 0.47 1.94 15 3 Si 1.01 34.48 29.56 68.60 2.03 36.51 15 4 H -0.25 -8.29 7.11 99.48 0.71 -7.58 15 5 H -0.27 -8.93 7.11 99.48 0.71 -8.23 15 6 H -0.26 -8.47 7.11 99.48 0.71 -7.77 15 7 C -0.45 -22.13 8.38 23.16 0.19 -21.94 15 8 H 0.10 4.38 6.28 -2.91 -0.02 4.36 15 9 C 0.20 10.56 6.63 38.88 0.26 10.82 15 10 C -0.16 -9.21 10.88 84.85 0.92 -8.29 15 11 N -0.46 -25.58 10.93 -184.80 -2.02 -27.60 15 12 C -0.04 -2.18 7.20 137.96 0.99 -1.19 15 13 C 0.58 24.33 3.24 71.23 0.23 24.56 15 14 F -0.17 -7.24 17.12 44.97 0.77 -6.47 15 15 F -0.17 -6.26 14.09 44.97 0.63 -5.62 15 16 F -0.18 -7.04 17.30 44.97 0.78 -6.27 15 17 N -0.46 -21.71 3.09 -482.73 -1.49 -23.20 15 18 C 0.03 1.00 6.04 44.99 0.27 1.28 15 19 C -0.15 -4.46 8.86 30.62 0.27 -4.19 15 20 C -0.16 -4.55 8.58 30.62 0.26 -4.29 15 21 H 0.29 13.07 8.30 -92.71 -0.77 12.30 15 22 H 0.18 10.62 5.78 -2.91 -0.02 10.60 15 23 H 0.13 4.23 8.14 -2.39 -0.02 4.21 15 24 H 0.09 3.08 7.25 -2.39 -0.02 3.06 15 25 H 0.14 3.05 8.14 -2.39 -0.02 3.03 15 26 H 0.14 2.97 8.14 -2.39 -0.02 2.95 15 27 H 0.08 2.76 7.25 -2.39 -0.02 2.74 15 Total: -1.00 -60.67 248.35 6.02 -54.65 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 1.22 Total: 19.68 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 3.87 Total: -1.29 kcal Atomic # 7 Polarization: -87.91 SS G_CDS: -3.28 Total: -91.19 kcal Atomic # 9 Polarization: -20.54 SS G_CDS: 2.18 Total: -18.36 kcal Atomic # 14 Polarization: 34.48 SS G_CDS: 2.03 Total: 36.51 kcal Total: -60.67 6.02 -54.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261168446.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.394 kcal (2) G-P(sol) polarization free energy of solvation -60.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds