Wall clock time and date at job start Mon Mar 30 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99608 * 2 1 4 4 H 1.48498 * 109.46883 * 264.45249 * 3 2 1 5 5 H 1.48493 * 109.47186 * 24.45684 * 3 2 1 6 6 H 1.48505 * 109.46945 * 144.45849 * 3 2 1 7 7 C 1.37873 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99798 * 4.92865 * 7 2 1 9 9 C 1.50702 * 120.00311 * 184.93132 * 7 2 1 10 10 H 1.09000 * 109.47322 * 25.15862 * 9 7 2 11 11 O 1.42901 * 109.47052 * 265.15956 * 9 7 2 12 12 C 1.42895 * 114.00208 * 153.99677 * 11 9 7 13 13 F 1.39906 * 109.47043 * 304.83832 * 12 11 9 14 14 F 1.39899 * 109.47372 * 64.84032 * 12 11 9 15 15 C 1.50699 * 109.47251 * 145.15823 * 9 7 2 16 16 C 1.38227 * 120.01073 * 94.99734 * 15 9 7 17 17 C 1.38220 * 120.02341 * 179.72222 * 16 15 9 18 18 C 1.38266 * 120.05290 * 0.02562 * 17 16 15 19 19 C 1.38180 * 120.02546 * 359.97438 * 18 17 16 20 20 C 1.38435 * 120.01152 * 274.72214 * 15 9 7 21 21 F 1.35092 * 120.02742 * 0.25395 * 20 15 9 22 22 H 0.97000 * 120.00230 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47385 * 184.84250 * 12 11 9 24 24 H 1.07997 * 119.98656 * 359.74915 * 16 15 9 25 25 H 1.07998 * 119.97370 * 180.02562 * 17 16 15 26 26 H 1.07999 * 119.98865 * 179.97438 * 18 17 16 27 27 H 1.07998 * 120.01330 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6137 1.9788 -1.3935 5 1 1.3928 2.6837 0.5796 6 1 3.4832 1.4769 0.8139 7 6 2.0046 -1.1940 0.0005 8 1 1.4676 -2.1276 -0.0794 9 6 3.5075 -1.1963 0.1127 10 1 3.8358 -0.2861 0.6146 11 8 4.0826 -1.2535 -1.1942 12 6 5.3932 -0.6903 -1.2777 13 9 5.3667 0.6251 -0.8016 14 9 6.2771 -1.4489 -0.5028 15 6 3.9499 -2.3966 0.9092 16 6 4.3263 -3.5571 0.2594 17 6 4.7376 -4.6563 0.9895 18 6 4.7726 -4.5967 2.3704 19 6 4.3968 -3.4377 3.0222 20 6 3.9849 -2.3356 2.2918 21 9 3.6177 -1.2018 2.9279 22 1 -0.4850 0.8400 -0.0004 23 1 5.7250 -0.6942 -2.3160 24 1 4.2994 -3.6047 -0.8192 25 1 5.0319 -5.5624 0.4809 26 1 5.0938 -5.4563 2.9399 27 1 4.4238 -3.3915 4.1009 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261184475.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:41 Heat of formation + Delta-G solvation = -197.207240 kcal Electronic energy + Delta-G solvation = -18444.536528 eV Core-core repulsion = 14944.489432 eV Total energy + Delta-G solvation = -3500.047097 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.95145 -49.77772 -48.05685 -40.13957 -38.26181 -35.00805 -32.87224 -31.37375 -29.46116 -26.31893 -24.89874 -23.48372 -22.12032 -19.84335 -19.04809 -18.78598 -18.36322 -18.24251 -17.21944 -16.92347 -16.54107 -16.22599 -15.23909 -15.18747 -15.02715 -14.83581 -14.48282 -14.42094 -14.05037 -13.87961 -13.42523 -13.18127 -12.95673 -12.80942 -12.71157 -12.09472 -11.94163 -11.59196 -11.18490 -10.98356 -9.77070 -9.47935 -8.54126 -6.67369 0.31943 0.39812 1.24075 1.24522 1.34429 2.15168 2.27801 2.73377 2.81776 3.13750 3.48923 3.80969 3.82146 3.96082 4.05608 4.13955 4.36300 4.50222 4.58979 4.99586 5.19365 5.22872 5.29334 5.48456 5.57325 5.84889 6.08722 6.14680 6.44268 7.03518 8.59896 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.021551 B = 0.012134 C = 0.009631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.914544 B = 2306.998086 C = 2906.674832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.042 3.958 3 Si 0.926 3.074 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.511 4.511 8 H 0.046 0.954 9 C 0.206 3.794 10 H 0.044 0.956 11 O -0.394 6.394 12 C 0.376 3.624 13 F -0.231 7.231 14 F -0.218 7.218 15 C -0.133 4.133 16 C -0.090 4.090 17 C -0.124 4.124 18 C -0.095 4.095 19 C -0.157 4.157 20 C 0.063 3.937 21 F -0.158 7.158 22 H 0.277 0.723 23 H 0.210 0.790 24 H 0.131 0.869 25 H 0.163 0.837 26 H 0.173 0.827 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.010 -6.051 0.696 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.161 4.161 3 Si 0.750 3.250 4 H -0.178 1.178 5 H -0.198 1.198 6 H -0.183 1.183 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.152 3.848 10 H 0.062 0.938 11 O -0.316 6.316 12 C 0.285 3.715 13 F -0.213 7.213 14 F -0.200 7.200 15 C -0.134 4.134 16 C -0.108 4.108 17 C -0.142 4.142 18 C -0.113 4.113 19 C -0.176 4.176 20 C 0.044 3.956 21 F -0.137 7.137 22 H 0.086 0.914 23 H 0.226 0.774 24 H 0.149 0.851 25 H 0.180 0.820 26 H 0.190 0.810 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 12.743 -5.964 0.601 14.083 hybrid contribution -0.195 1.425 0.336 1.477 sum 12.548 -4.540 0.936 13.377 Atomic orbital electron populations 1.69964 1.07712 1.29036 1.48504 1.25820 0.95547 1.02522 0.92187 0.86085 0.79126 0.79352 0.80429 1.17792 1.19835 1.18305 1.20736 0.88261 0.94006 1.51780 0.93584 1.19126 0.92697 0.92738 0.80264 0.93843 1.88694 1.27921 1.79788 1.35226 1.24073 0.80468 0.71589 0.95387 1.92970 1.96241 1.40465 1.91611 1.93020 1.70301 1.76556 1.80125 1.20637 1.00612 0.99160 0.92986 1.21012 0.97331 0.91610 1.00885 1.21572 0.99447 0.98621 0.94565 1.21394 0.97973 0.97340 0.94567 1.21390 1.02519 0.92289 1.01392 1.18021 1.02999 0.84099 0.90463 1.91402 1.89788 1.50375 1.82138 0.91369 0.77426 0.85142 0.81957 0.80985 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.44 13.96 21.45 0.30 -56.14 15 2 C 0.04 2.50 5.47 84.65 0.46 2.96 15 3 Si 0.93 46.05 26.52 68.60 1.82 47.87 15 4 H -0.25 -11.95 7.11 99.48 0.71 -11.24 15 5 H -0.27 -12.95 7.11 99.48 0.71 -12.24 15 6 H -0.26 -12.79 5.93 99.48 0.59 -12.20 15 7 C -0.51 -30.20 9.22 25.60 0.24 -29.96 15 8 H 0.05 2.98 8.06 -2.91 -0.02 2.96 15 9 C 0.21 10.37 1.49 29.10 0.04 10.42 15 10 H 0.04 2.32 3.72 -2.39 -0.01 2.31 15 11 O -0.39 -17.43 9.14 -148.98 -1.36 -18.79 15 12 C 0.38 13.04 6.30 113.37 0.71 13.75 15 13 F -0.23 -9.10 15.18 44.97 0.68 -8.41 15 14 F -0.22 -7.63 15.79 44.97 0.71 -6.92 15 15 C -0.13 -5.91 4.18 -19.82 -0.08 -5.99 15 16 C -0.09 -3.31 8.64 22.26 0.19 -3.12 15 17 C -0.12 -3.42 10.04 22.27 0.22 -3.20 15 18 C -0.10 -2.42 10.04 22.26 0.22 -2.20 15 19 C -0.16 -5.01 10.03 22.31 0.22 -4.79 15 20 C 0.06 2.70 7.24 22.38 0.16 2.86 15 21 F -0.16 -7.46 16.57 44.97 0.74 -6.71 15 22 H 0.28 15.78 8.31 -92.71 -0.77 15.01 15 23 H 0.21 4.63 8.14 -2.38 -0.02 4.61 15 24 H 0.13 4.65 7.35 -2.91 -0.02 4.63 15 25 H 0.16 3.11 8.06 -2.91 -0.02 3.08 15 26 H 0.17 2.73 8.06 -2.91 -0.02 2.71 15 27 H 0.15 3.95 8.06 -2.91 -0.02 3.93 15 Total: -1.00 -71.20 249.72 6.38 -64.82 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.09 Total: 3.56 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 2.40 Total: -19.27 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.30 Total: -56.14 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.36 Total: -18.79 kcal Atomic # 9 Polarization: -24.19 SS G_CDS: 2.14 Total: -22.05 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.82 Total: 47.87 kcal Total: -71.20 6.38 -64.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261184475.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.388 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds