Wall clock time and date at job start Mon Mar 30 2020 06:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86799 * 120.00555 * 2 1 4 4 H 1.48500 * 109.46965 * 270.00030 * 3 2 1 5 5 H 1.48502 * 109.47042 * 29.99653 * 3 2 1 6 6 H 1.48504 * 109.47497 * 149.99709 * 3 2 1 7 7 C 1.37886 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99883 * 174.48542 * 7 2 1 9 9 C 1.50698 * 119.99632 * 354.21142 * 7 2 1 10 10 H 1.09003 * 109.47100 * 28.48463 * 9 7 2 11 11 O 1.42901 * 109.47040 * 148.48887 * 9 7 2 12 12 C 1.42902 * 113.99325 * 270.41217 * 11 9 7 13 13 F 1.39898 * 109.47518 * 299.21391 * 12 11 9 14 14 F 1.39899 * 109.47480 * 59.22030 * 12 11 9 15 15 C 1.50700 * 109.47122 * 268.48605 * 9 7 2 16 16 C 1.38253 * 119.97262 * 279.72689 * 15 9 7 17 17 C 1.38192 * 120.02398 * 179.76358 * 16 15 9 18 18 C 1.38463 * 119.97612 * 0.51326 * 17 16 15 19 19 F 1.35099 * 120.02761 * 179.76671 * 18 17 16 20 20 C 1.38467 * 119.94563 * 359.73730 * 18 17 16 21 21 C 1.38197 * 119.97541 * 0.02562 * 20 18 17 22 22 H 0.97004 * 119.99858 * 5.03810 * 1 2 3 23 23 H 1.09009 * 109.46748 * 179.21718 * 12 11 9 24 24 H 1.08000 * 119.98849 * 0.02562 * 16 15 9 25 25 H 1.07998 * 120.01777 * 180.25210 * 17 16 15 26 26 H 1.08001 * 120.00817 * 179.97438 * 20 18 17 27 27 H 1.08002 * 119.98680 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0807 -1.1964 -0.0893 9 6 1.2566 -2.4958 0.1327 10 1 0.2533 -2.3817 -0.2776 11 8 1.9509 -3.5189 -0.5837 12 6 1.5532 -3.6432 -1.9506 13 9 0.1933 -3.9656 -2.0132 14 9 1.7761 -2.4315 -2.6133 15 6 1.1638 -2.8762 1.5880 16 6 2.2399 -3.4765 2.2149 17 6 2.1577 -3.8214 3.5506 18 6 0.9933 -3.5752 4.2583 19 9 0.9102 -3.9162 5.5629 20 6 -0.0856 -2.9787 3.6279 21 6 0.0006 -2.6302 2.2934 22 1 -0.4850 0.8368 -0.0738 23 1 2.1357 -4.4311 -2.4283 24 1 3.1466 -3.6721 1.6617 25 1 2.9998 -4.2866 4.0413 26 1 -0.9945 -2.7866 4.1788 27 1 -0.8407 -2.1645 1.8016 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261189195.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:43 Heat of formation + Delta-G solvation = -201.887434 kcal Electronic energy + Delta-G solvation = -17822.785523 eV Core-core repulsion = 14322.535478 eV Total energy + Delta-G solvation = -3500.250045 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.78706 -49.68006 -47.81069 -40.11708 -38.03955 -34.90770 -32.18354 -31.93037 -28.61419 -26.40245 -24.64200 -23.76132 -22.17934 -19.08565 -18.95957 -18.68325 -18.33593 -18.04337 -16.88229 -16.63451 -16.48485 -16.26322 -15.19629 -15.03914 -14.76084 -14.58271 -14.29627 -14.20398 -13.93149 -13.60681 -13.36484 -13.11755 -12.89510 -12.71834 -12.49018 -12.27832 -11.93827 -11.59149 -10.94380 -10.69222 -9.91364 -9.35736 -8.23857 -6.37855 0.34048 0.43620 1.39325 1.40504 1.50077 2.33171 2.53272 2.82199 3.09533 3.10426 3.38886 3.95026 4.00088 4.05900 4.17123 4.39917 4.56882 4.60333 4.92062 5.12183 5.23215 5.26497 5.46734 5.61015 5.70290 5.94168 6.05436 6.11125 6.77186 7.31044 8.80056 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.018238 B = 0.009803 C = 0.007330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.864570 B = 2855.638279 C = 3818.880665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.029 3.971 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.233 3.767 10 H 0.038 0.962 11 O -0.405 6.405 12 C 0.400 3.600 13 F -0.231 7.231 14 F -0.221 7.221 15 C -0.066 4.066 16 C -0.084 4.084 17 C -0.150 4.150 18 C 0.066 3.934 19 F -0.146 7.146 20 C -0.153 4.153 21 C -0.094 4.094 22 H 0.268 0.732 23 H 0.210 0.790 24 H 0.136 0.864 25 H 0.157 0.843 26 H 0.148 0.852 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 -7.074 1.847 7.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.173 4.173 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.178 3.822 10 H 0.056 0.944 11 O -0.327 6.327 12 C 0.309 3.691 13 F -0.214 7.214 14 F -0.203 7.203 15 C -0.067 4.067 16 C -0.103 4.103 17 C -0.168 4.168 18 C 0.047 3.953 19 F -0.125 7.125 20 C -0.172 4.172 21 C -0.112 4.112 22 H 0.077 0.923 23 H 0.226 0.774 24 H 0.154 0.846 25 H 0.175 0.825 26 H 0.166 0.834 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.683 -7.052 2.037 7.815 hybrid contribution -0.203 1.313 -0.143 1.336 sum 2.480 -5.739 1.894 6.532 Atomic orbital electron populations 1.69954 1.07114 1.28387 1.49102 1.25650 0.95687 1.02450 0.93484 0.85588 0.78918 0.79058 0.78425 1.19944 1.20609 1.19062 1.21491 0.93969 0.90677 1.51394 0.92248 1.18738 0.93279 0.84370 0.85850 0.94388 1.88143 1.64811 1.57992 1.21752 1.23739 0.77965 0.84800 0.82626 1.92973 1.39460 1.92704 1.96235 1.93041 1.94271 1.51556 1.81449 1.20346 0.93779 0.95377 0.97200 1.20892 0.98554 0.97144 0.93674 1.21271 0.97629 1.03381 0.94543 1.17685 0.96296 1.02840 0.78495 1.91437 1.96879 1.90643 1.33556 1.21167 0.99267 1.01727 0.95043 1.20848 0.97868 0.98644 0.93861 0.92251 0.77376 0.84609 0.82493 0.83450 0.86424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.33 12.81 21.45 0.27 -50.06 15 2 C 0.03 1.55 5.45 84.66 0.46 2.01 15 3 Si 0.96 42.76 29.54 68.60 2.03 44.78 15 4 H -0.27 -12.03 7.11 99.48 0.71 -11.32 15 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 15 6 H -0.27 -11.62 7.11 99.48 0.71 -10.92 15 7 C -0.54 -28.60 7.74 25.60 0.20 -28.40 15 8 H 0.06 3.18 7.82 -2.91 -0.02 3.15 15 9 C 0.23 11.43 2.21 29.10 0.06 11.49 15 10 H 0.04 2.10 6.28 -2.39 -0.01 2.09 15 11 O -0.40 -17.24 9.59 -148.98 -1.43 -18.67 15 12 C 0.40 14.55 6.26 113.37 0.71 15.26 15 13 F -0.23 -9.16 16.67 44.97 0.75 -8.41 15 14 F -0.22 -9.54 16.35 44.97 0.74 -8.80 15 15 C -0.07 -2.95 4.96 -19.86 -0.10 -3.05 15 16 C -0.08 -3.23 9.35 22.26 0.21 -3.03 15 17 C -0.15 -4.95 10.03 22.31 0.22 -4.73 15 18 C 0.07 2.26 7.30 22.38 0.16 2.42 15 19 F -0.15 -4.69 17.27 44.97 0.78 -3.92 15 20 C -0.15 -5.52 10.03 22.31 0.22 -5.29 15 21 C -0.09 -3.98 9.67 22.26 0.22 -3.76 15 22 H 0.27 14.16 8.32 -92.71 -0.77 13.39 15 23 H 0.21 4.74 8.14 -2.38 -0.02 4.72 15 24 H 0.14 4.91 7.77 -2.91 -0.02 4.89 15 25 H 0.16 4.09 8.06 -2.91 -0.02 4.06 15 26 H 0.15 4.49 8.06 -2.91 -0.02 4.46 15 27 H 0.12 5.32 8.04 -2.91 -0.02 5.29 15 Total: -1.00 -60.64 259.03 6.70 -53.94 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.20 Total: 8.21 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 2.37 Total: -17.07 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.27 Total: -50.06 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.43 Total: -18.67 kcal Atomic # 9 Polarization: -23.39 SS G_CDS: 2.26 Total: -21.13 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -60.64 6.70 -53.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261189195.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.946 kcal (2) G-P(sol) polarization free energy of solvation -60.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds