Wall clock time and date at job start Mon Mar 30 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99732 * 2 1 4 4 H 1.48506 * 109.46849 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47042 * 299.99355 * 3 2 1 6 6 H 1.48497 * 109.47283 * 60.00028 * 3 2 1 7 7 C 1.37874 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00098 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.46902 * 59.99944 * 9 7 2 11 11 O 1.42899 * 109.46915 * 299.99891 * 9 7 2 12 12 C 1.42905 * 113.99778 * 150.00141 * 11 9 7 13 13 F 1.39897 * 109.46886 * 299.99616 * 12 11 9 14 14 F 1.39898 * 109.47456 * 59.99835 * 12 11 9 15 15 C 1.50695 * 109.47066 * 179.97438 * 9 7 2 16 16 C 1.38247 * 119.97540 * 84.73166 * 15 9 7 17 17 C 1.38194 * 120.02386 * 179.72623 * 16 15 9 18 18 C 1.38459 * 119.97690 * 0.52070 * 17 16 15 19 19 F 1.35105 * 120.02622 * 179.72810 * 18 17 16 20 20 C 1.38459 * 119.94808 * 359.74846 * 18 17 16 21 21 C 1.38200 * 119.97388 * 0.02562 * 20 18 17 22 22 H 0.96992 * 120.00487 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47103 * 180.02562 * 12 11 9 24 24 H 1.07995 * 119.98535 * 359.97279 * 16 15 9 25 25 H 1.08002 * 120.01127 * 180.29146 * 17 16 15 26 26 H 1.08001 * 120.01282 * 179.97438 * 20 18 17 27 27 H 1.08001 * 119.98626 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6248 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1670 12 6 -0.7643 -3.3402 0.9886 13 9 -1.5387 -2.7670 -0.0257 14 9 -0.4287 -4.6514 0.6345 15 6 2.2304 -3.6445 0.0005 16 6 2.7629 -4.0981 1.1930 17 6 3.6567 -5.1520 1.1947 18 6 4.0272 -5.7468 0.0006 19 9 4.9052 -6.7737 0.0006 20 6 3.4976 -5.2881 -1.1937 21 6 2.6003 -4.2370 -1.1925 22 1 -0.4850 0.8399 -0.0004 23 1 -1.3329 -3.3488 1.9185 24 1 2.4771 -3.6311 2.1239 25 1 4.0689 -5.5092 2.1269 26 1 3.7862 -5.7510 -2.1258 27 1 2.1867 -3.8794 -2.1239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261189197.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:46 Heat of formation + Delta-G solvation = -184.594996 kcal Electronic energy + Delta-G solvation = -17947.845965 eV Core-core repulsion = 14448.345776 eV Total energy + Delta-G solvation = -3499.500189 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.46864 -47.99543 -46.08832 -38.64758 -36.16099 -32.73034 -30.74143 -30.53044 -26.91638 -24.40744 -23.09265 -22.39111 -20.50455 -17.44441 -17.22982 -17.06490 -16.63447 -16.07690 -15.61592 -15.18220 -15.15038 -14.37498 -13.62252 -13.42573 -13.00751 -12.94592 -12.81619 -12.52913 -12.38905 -11.91710 -11.63694 -11.35263 -11.17745 -10.97944 -10.75800 -10.42124 -10.33102 -9.59961 -9.15839 -8.64861 -8.55407 -7.89306 -6.22051 -4.37389 1.74864 1.80265 3.20236 3.29139 3.33447 4.15800 4.21206 4.37442 4.74238 4.74651 5.27108 5.31268 5.34169 5.56118 5.65527 5.90040 5.95854 5.98059 6.41829 6.61300 6.64556 6.75225 6.91537 7.18896 7.46512 7.68712 7.89169 8.20543 8.70191 9.33551 10.83348 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.021368 B = 0.009102 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.033201 B = 3075.426679 C = 3997.844358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.079 3.921 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.524 4.524 8 H 0.070 0.930 9 C 0.243 3.757 10 H 0.044 0.956 11 O -0.363 6.363 12 C 0.393 3.607 13 F -0.205 7.205 14 F -0.229 7.229 15 C -0.074 4.074 16 C -0.073 4.073 17 C -0.159 4.159 18 C 0.069 3.931 19 F -0.153 7.153 20 C -0.157 4.157 21 C -0.089 4.089 22 H 0.265 0.735 23 H 0.135 0.865 24 H 0.133 0.867 25 H 0.125 0.875 26 H 0.126 0.874 27 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.488 -6.905 1.190 7.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.129 4.129 3 Si 0.727 3.273 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.561 4.561 8 H 0.088 0.912 9 C 0.188 3.812 10 H 0.062 0.938 11 O -0.284 6.284 12 C 0.300 3.700 13 F -0.187 7.187 14 F -0.212 7.212 15 C -0.075 4.075 16 C -0.091 4.091 17 C -0.177 4.177 18 C 0.050 3.950 19 F -0.132 7.132 20 C -0.176 4.176 21 C -0.107 4.107 22 H 0.075 0.925 23 H 0.152 0.848 24 H 0.151 0.849 25 H 0.143 0.857 26 H 0.144 0.856 27 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.399 -6.764 1.322 7.032 hybrid contribution 0.447 0.513 -0.248 0.724 sum 1.846 -6.250 1.074 6.605 Atomic orbital electron populations 1.70025 1.05987 1.27200 1.45543 1.25099 0.94924 0.99562 0.93309 0.86407 0.80233 0.82828 0.77807 1.19441 1.20699 1.20652 1.20963 0.93061 0.88323 1.53723 0.91170 1.18916 0.86385 0.90651 0.85230 0.93845 1.88695 1.30617 1.68843 1.40259 1.22894 0.85798 0.73173 0.88150 1.93035 1.75846 1.84700 1.65168 1.92998 1.93283 1.40812 1.94075 1.21075 0.97785 0.96077 0.92536 1.20875 0.94602 0.94472 0.99159 1.21056 1.01272 0.98902 0.96502 1.17632 0.93459 0.88839 0.95046 1.91425 1.67123 1.57112 1.97504 1.20978 1.00426 0.99653 0.96542 1.20869 0.96761 0.94469 0.98584 0.92477 0.84797 0.84916 0.85676 0.85640 0.85427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.27 12.84 55.43 0.71 -22.56 15 2 C 0.08 2.07 5.40 -17.82 -0.10 1.98 15 3 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 15 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.52 -13.76 8.78 -34.44 -0.30 -14.06 15 8 H 0.07 1.84 7.74 -52.49 -0.41 1.43 15 9 C 0.24 5.87 1.97 -29.04 -0.06 5.82 15 10 H 0.04 1.14 7.11 -51.93 -0.37 0.77 15 11 O -0.36 -8.55 8.84 -35.23 -0.31 -8.86 15 12 C 0.39 7.92 6.26 101.05 0.63 8.55 15 13 F -0.21 -4.63 16.63 2.25 0.04 -4.59 15 14 F -0.23 -4.56 16.41 2.25 0.04 -4.52 15 15 C -0.07 -1.57 4.06 -104.62 -0.42 -1.99 15 16 C -0.07 -1.41 9.35 -39.59 -0.37 -1.78 15 17 C -0.16 -2.73 10.03 -39.52 -0.40 -3.13 15 18 C 0.07 1.20 7.30 -39.42 -0.29 0.92 15 19 F -0.15 -2.55 17.27 2.25 0.04 -2.51 15 20 C -0.16 -2.68 10.03 -39.51 -0.40 -3.08 15 21 C -0.09 -1.68 9.68 -39.59 -0.38 -2.07 15 22 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 23 H 0.14 2.13 8.14 -51.93 -0.42 1.70 15 24 H 0.13 2.53 7.64 -52.49 -0.40 2.13 15 25 H 0.13 1.83 8.06 -52.49 -0.42 1.40 15 26 H 0.13 1.80 8.06 -52.49 -0.42 1.37 15 27 H 0.13 2.27 8.06 -52.49 -0.42 1.84 15 LS Contribution 258.80 15.07 3.90 3.90 Total: -1.00 -28.26 258.80 -4.69 -32.95 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -2.00 Total: -0.19 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -2.08 Total: -8.85 kcal Atomic # 7 Polarization: -23.27 SS G_CDS: 0.71 Total: -22.56 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.31 Total: -8.86 kcal Atomic # 9 Polarization: -11.74 SS G_CDS: 0.11 Total: -11.62 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.26 -4.69 -32.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261189197.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.646 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds