Wall clock time and date at job start Mon Mar 30 2020 06:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99732 * 2 1 4 4 H 1.48506 * 109.46849 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47042 * 299.99355 * 3 2 1 6 6 H 1.48497 * 109.47283 * 60.00028 * 3 2 1 7 7 C 1.37874 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00098 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.46902 * 59.99944 * 9 7 2 11 11 O 1.42899 * 109.46915 * 299.99891 * 9 7 2 12 12 C 1.42905 * 113.99778 * 150.00141 * 11 9 7 13 13 F 1.39897 * 109.46886 * 299.99616 * 12 11 9 14 14 F 1.39898 * 109.47456 * 59.99835 * 12 11 9 15 15 C 1.50695 * 109.47066 * 179.97438 * 9 7 2 16 16 C 1.38247 * 119.97540 * 84.73166 * 15 9 7 17 17 C 1.38194 * 120.02386 * 179.72623 * 16 15 9 18 18 C 1.38459 * 119.97690 * 0.52070 * 17 16 15 19 19 F 1.35105 * 120.02622 * 179.72810 * 18 17 16 20 20 C 1.38459 * 119.94808 * 359.74846 * 18 17 16 21 21 C 1.38200 * 119.97388 * 0.02562 * 20 18 17 22 22 H 0.96992 * 120.00487 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47103 * 180.02562 * 12 11 9 24 24 H 1.07995 * 119.98535 * 359.97279 * 16 15 9 25 25 H 1.08002 * 120.01127 * 180.29146 * 17 16 15 26 26 H 1.08001 * 120.01282 * 179.97438 * 20 18 17 27 27 H 1.08001 * 119.98626 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6248 -2.5571 -0.8897 11 8 0.4291 -2.5746 1.1670 12 6 -0.7643 -3.3402 0.9886 13 9 -1.5387 -2.7670 -0.0257 14 9 -0.4287 -4.6514 0.6345 15 6 2.2304 -3.6445 0.0005 16 6 2.7629 -4.0981 1.1930 17 6 3.6567 -5.1520 1.1947 18 6 4.0272 -5.7468 0.0006 19 9 4.9052 -6.7737 0.0006 20 6 3.4976 -5.2881 -1.1937 21 6 2.6003 -4.2370 -1.1925 22 1 -0.4850 0.8399 -0.0004 23 1 -1.3329 -3.3488 1.9185 24 1 2.4771 -3.6311 2.1239 25 1 4.0689 -5.5092 2.1269 26 1 3.7862 -5.7510 -2.1258 27 1 2.1867 -3.8794 -2.1239 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261189197.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:00:46 Heat of formation + Delta-G solvation = -200.290868 kcal Electronic energy + Delta-G solvation = -17948.526589 eV Core-core repulsion = 14448.345776 eV Total energy + Delta-G solvation = -3500.180813 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.81923 -49.65063 -47.76418 -40.16808 -37.88038 -34.68235 -32.34663 -31.96622 -28.69134 -26.13905 -24.78899 -23.82211 -22.09032 -19.24513 -18.81209 -18.62858 -18.27536 -17.84565 -17.09265 -16.85261 -16.51051 -16.04915 -15.15636 -15.10090 -14.65444 -14.54264 -14.34167 -14.16467 -13.96560 -13.56486 -13.22579 -13.11397 -12.92660 -12.64886 -12.50288 -12.17429 -11.86794 -11.48001 -10.95140 -10.60313 -9.96450 -9.40922 -8.19492 -6.42125 0.28432 0.38244 1.42378 1.45385 1.56794 2.37834 2.61484 2.79642 3.00354 3.34398 3.43877 3.90044 4.00123 4.02106 4.08488 4.32231 4.49567 4.52818 4.86428 5.06904 5.13487 5.20621 5.38514 5.64069 5.69548 5.95265 6.07213 6.39505 6.70314 7.32429 8.85306 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.021368 B = 0.009102 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.033201 B = 3075.426679 C = 3997.844358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.034 3.966 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.249 3.751 10 H 0.011 0.989 11 O -0.380 6.380 12 C 0.388 3.612 13 F -0.222 7.222 14 F -0.228 7.228 15 C -0.099 4.099 16 C -0.082 4.082 17 C -0.150 4.150 18 C 0.070 3.930 19 F -0.145 7.145 20 C -0.148 4.148 21 C -0.100 4.100 22 H 0.267 0.733 23 H 0.185 0.815 24 H 0.130 0.870 25 H 0.155 0.845 26 H 0.156 0.844 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.543 -7.628 1.606 8.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.171 4.171 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.580 4.580 8 H 0.082 0.918 9 C 0.194 3.806 10 H 0.029 0.971 11 O -0.301 6.301 12 C 0.296 3.704 13 F -0.204 7.204 14 F -0.210 7.210 15 C -0.099 4.099 16 C -0.100 4.100 17 C -0.169 4.169 18 C 0.051 3.949 19 F -0.124 7.124 20 C -0.167 4.167 21 C -0.118 4.118 22 H 0.076 0.924 23 H 0.201 0.799 24 H 0.148 0.852 25 H 0.172 0.828 26 H 0.174 0.826 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.458 -7.499 1.737 8.080 hybrid contribution 0.127 0.624 -0.381 0.742 sum 2.585 -6.875 1.355 7.469 Atomic orbital electron populations 1.70125 1.07209 1.27920 1.46636 1.25846 0.95701 1.02652 0.92905 0.85432 0.78992 0.78888 0.77855 1.19140 1.20231 1.20273 1.21229 0.93015 0.89835 1.53938 0.91823 1.18571 0.86462 0.91426 0.84097 0.97110 1.88589 1.31873 1.69905 1.39778 1.23545 0.84929 0.72585 0.89375 1.93001 1.76096 1.85072 1.66256 1.92991 1.93285 1.40527 1.94218 1.20903 0.98547 0.96270 0.94206 1.20864 0.95394 0.95354 0.98378 1.21276 1.00054 0.97666 0.97884 1.17733 0.93215 0.88755 0.95178 1.91451 1.66780 1.56692 1.97477 1.21218 0.99022 0.98506 0.97916 1.20963 0.97509 0.95238 0.98077 0.92435 0.79913 0.85213 0.82776 0.82650 0.85156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.94 12.84 21.45 0.28 -48.66 15 2 C 0.03 1.78 5.40 84.65 0.46 2.24 15 3 Si 0.96 41.79 29.54 68.60 2.03 43.82 15 4 H -0.27 -11.33 7.11 99.48 0.71 -10.62 15 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 15 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 15 7 C -0.54 -29.03 8.78 25.60 0.22 -28.81 15 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 15 9 C 0.25 12.32 1.97 29.10 0.06 12.38 15 10 H 0.01 0.61 7.11 -2.38 -0.02 0.59 15 11 O -0.38 -18.05 8.84 -148.98 -1.32 -19.37 15 12 C 0.39 15.47 6.26 113.37 0.71 16.18 15 13 F -0.22 -10.12 16.63 44.97 0.75 -9.37 15 14 F -0.23 -8.93 16.41 44.97 0.74 -8.20 15 15 C -0.10 -4.17 4.06 -19.86 -0.08 -4.25 15 16 C -0.08 -3.09 9.35 22.26 0.21 -2.88 15 17 C -0.15 -4.82 10.03 22.31 0.22 -4.59 15 18 C 0.07 2.24 7.30 22.38 0.16 2.41 15 19 F -0.15 -4.36 17.27 44.97 0.78 -3.59 15 20 C -0.15 -4.70 10.03 22.31 0.22 -4.48 15 21 C -0.10 -3.72 9.68 22.26 0.22 -3.51 15 22 H 0.27 13.96 8.31 -92.71 -0.77 13.19 15 23 H 0.18 5.45 8.14 -2.39 -0.02 5.43 15 24 H 0.13 4.89 7.64 -2.91 -0.02 4.87 15 25 H 0.15 3.98 8.06 -2.91 -0.02 3.95 15 26 H 0.16 3.94 8.06 -2.91 -0.02 3.91 15 27 H 0.13 4.66 8.06 -2.91 -0.02 4.64 15 Total: -1.00 -60.27 258.80 6.85 -53.42 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 1.20 Total: 7.26 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 2.40 Total: -15.32 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: 0.28 Total: -48.66 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -1.32 Total: -19.37 kcal Atomic # 9 Polarization: -23.41 SS G_CDS: 2.26 Total: -21.15 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -60.27 6.85 -53.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261189197.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.867 kcal (2) G-P(sol) polarization free energy of solvation -60.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds