Wall clock time and date at job start Mon Mar 30 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48499 * 109.47031 * 239.99584 * 3 2 1 5 5 H 1.48503 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47585 * 119.99678 * 3 2 1 7 7 C 1.37875 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00080 * 174.52882 * 7 2 1 9 9 C 1.50702 * 119.99742 * 354.52816 * 7 2 1 10 10 H 1.08996 * 109.47215 * 28.37932 * 9 7 2 11 11 O 1.42898 * 109.46777 * 148.37884 * 9 7 2 12 12 C 1.42900 * 113.99912 * 270.42065 * 11 9 7 13 13 F 1.39903 * 109.47090 * 299.19047 * 12 11 9 14 14 F 1.39897 * 109.47212 * 59.18779 * 12 11 9 15 15 C 1.50700 * 109.46884 * 268.37463 * 9 7 2 16 16 C 1.38268 * 119.98288 * 100.00551 * 15 9 7 17 17 C 1.38225 * 120.04896 * 179.97438 * 16 15 9 18 18 C 1.38219 * 120.02836 * 359.97438 * 17 16 15 19 19 C 1.38445 * 119.97426 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.02660 * 180.02562 * 19 18 17 21 21 C 1.38176 * 119.98880 * 279.72751 * 15 9 7 22 22 H 0.97002 * 120.00627 * 5.03260 * 1 2 3 23 23 H 1.08997 * 109.47328 * 179.18948 * 12 11 9 24 24 H 1.07998 * 119.97591 * 359.97438 * 16 15 9 25 25 H 1.08000 * 119.98848 * 180.02562 * 17 16 15 26 26 H 1.07996 * 120.01726 * 180.02562 * 18 17 16 27 27 H 1.07997 * 120.01199 * 0.02562 * 21 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0808 -1.1961 -0.0886 9 6 1.2562 -2.4961 0.1256 10 1 0.2542 -2.3804 -0.2876 11 8 1.9527 -3.5165 -0.5925 12 6 1.5595 -3.6357 -1.9612 13 9 0.1999 -3.9583 -2.0294 14 9 1.7841 -2.4213 -2.6183 15 6 1.1589 -2.8819 1.5791 16 6 -0.0065 -2.6382 2.2822 17 6 -0.0974 -2.9920 3.6153 18 6 0.9766 -3.5904 4.2469 19 6 2.1440 -3.8349 3.5440 20 9 3.1942 -4.4202 4.1602 21 6 2.2322 -3.4842 2.2071 22 1 -0.4851 0.8368 -0.0737 23 1 2.1438 -4.4214 -2.4400 24 1 -0.8463 -2.1711 1.7894 25 1 -1.0083 -2.8016 4.1634 26 1 0.9052 -3.8671 5.2884 27 1 3.1409 -3.6781 1.6567 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261195803.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:17 Heat of formation + Delta-G solvation = -186.035338 kcal Electronic energy + Delta-G solvation = -17899.929344 eV Core-core repulsion = 14400.366697 eV Total energy + Delta-G solvation = -3499.562647 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.31397 -48.10176 -46.20330 -38.50497 -36.40833 -33.00874 -30.90308 -29.74335 -27.08625 -24.75438 -23.15397 -21.87464 -20.63006 -17.43933 -17.28980 -17.10205 -16.47322 -16.06604 -15.43888 -15.26630 -15.00262 -14.67184 -13.71624 -13.26001 -13.13481 -12.87583 -12.77762 -12.59440 -12.38300 -11.79378 -11.56648 -11.26869 -11.11640 -11.01247 -10.75831 -10.66576 -10.40441 -9.80472 -9.16577 -8.71124 -8.18411 -7.87759 -6.26916 -4.34732 1.90934 1.96920 3.23992 3.27385 3.30984 3.98790 4.24546 4.37536 4.67805 4.87816 5.06806 5.38549 5.42145 5.54041 5.73059 5.97447 6.08375 6.17714 6.63737 6.73878 6.75864 6.94106 7.07533 7.29223 7.63851 7.64420 7.81248 7.88613 8.76438 9.31692 10.78109 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.010432 C = 0.007958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.904430 B = 2683.304759 C = 3517.603775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.225 3.775 10 H 0.074 0.926 11 O -0.401 6.401 12 C 0.412 3.588 13 F -0.222 7.222 14 F -0.201 7.201 15 C -0.004 4.004 16 C -0.115 4.115 17 C -0.100 4.100 18 C -0.180 4.180 19 C 0.081 3.919 20 F -0.153 7.153 21 C -0.140 4.140 22 H 0.269 0.731 23 H 0.144 0.856 24 H 0.132 0.868 25 H 0.122 0.878 26 H 0.121 0.879 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -6.091 1.479 6.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.131 4.131 3 Si 0.729 3.271 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.086 0.914 9 C 0.170 3.830 10 H 0.092 0.908 11 O -0.324 6.324 12 C 0.320 3.680 13 F -0.204 7.204 14 F -0.183 7.183 15 C -0.005 4.005 16 C -0.133 4.133 17 C -0.118 4.118 18 C -0.199 4.199 19 C 0.062 3.938 20 F -0.132 7.132 21 C -0.159 4.159 22 H 0.079 0.921 23 H 0.160 0.840 24 H 0.150 0.850 25 H 0.140 0.860 26 H 0.139 0.861 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.432 -6.063 1.637 6.295 hybrid contribution 0.400 1.143 0.029 1.211 sum 0.832 -4.921 1.666 5.261 Atomic orbital electron populations 1.69839 1.06062 1.28045 1.47778 1.24962 0.94980 0.99685 0.93458 0.86467 0.79640 0.81925 0.79026 1.19814 1.20971 1.19853 1.21268 0.94302 0.89285 1.51558 0.91415 1.19079 0.95304 0.84330 0.84277 0.90788 1.88193 1.65011 1.59034 1.20144 1.22680 0.77695 0.84024 0.83635 1.92996 1.38368 1.92771 1.96281 1.93086 1.94159 1.49536 1.81471 1.20170 0.91404 0.91091 0.97863 1.21129 0.98406 0.99734 0.94029 1.20855 0.97714 0.98448 0.94811 1.20849 0.93378 1.05602 1.00112 1.17726 0.84741 0.99599 0.91732 1.91416 1.56319 1.82278 1.83157 1.20925 1.00839 1.01858 0.92283 0.92092 0.83964 0.84983 0.86011 0.86084 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.84 12.81 55.43 0.71 -23.13 15 2 C 0.07 1.97 5.45 -17.82 -0.10 1.87 15 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.87 15 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 7 C -0.53 -14.00 7.74 -34.44 -0.27 -14.27 15 8 H 0.07 1.82 7.82 -52.49 -0.41 1.41 15 9 C 0.22 5.50 2.21 -29.03 -0.06 5.43 15 10 H 0.07 1.97 6.28 -51.93 -0.33 1.65 15 11 O -0.40 -8.83 9.59 -35.23 -0.34 -9.17 15 12 C 0.41 7.81 6.26 101.05 0.63 8.44 15 13 F -0.22 -4.42 16.67 2.25 0.04 -4.39 15 14 F -0.20 -4.37 16.35 2.25 0.04 -4.34 15 15 C 0.00 -0.10 4.96 -104.63 -0.52 -0.62 15 16 C -0.11 -2.39 9.67 -39.57 -0.38 -2.78 15 17 C -0.10 -1.77 10.04 -39.59 -0.40 -2.17 15 18 C -0.18 -3.14 10.03 -39.51 -0.40 -3.54 15 19 C 0.08 1.56 7.30 -39.41 -0.29 1.28 15 20 F -0.15 -2.84 17.27 2.25 0.04 -2.80 15 21 C -0.14 -2.96 9.33 -39.51 -0.37 -3.33 15 22 H 0.27 6.96 8.32 -40.82 -0.34 6.62 15 23 H 0.14 1.89 8.14 -51.93 -0.42 1.47 15 24 H 0.13 2.84 8.04 -52.49 -0.42 2.42 15 25 H 0.12 1.75 8.06 -52.49 -0.42 1.33 15 26 H 0.12 1.76 8.06 -52.49 -0.42 1.33 15 27 H 0.13 2.70 7.77 -52.49 -0.41 2.30 15 LS Contribution 259.03 15.07 3.90 3.90 Total: -1.00 -28.30 259.03 -4.75 -33.05 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -1.97 Total: 0.67 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -2.15 Total: -9.68 kcal Atomic # 7 Polarization: -23.84 SS G_CDS: 0.71 Total: -23.13 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.34 Total: -9.17 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 0.11 Total: -11.52 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.30 -4.75 -33.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261195803.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.981 kcal (2) G-P(sol) polarization free energy of solvation -28.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds