Wall clock time and date at job start Mon Mar 30 2020 06:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48499 * 109.47031 * 239.99584 * 3 2 1 5 5 H 1.48503 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47585 * 119.99678 * 3 2 1 7 7 C 1.37875 * 120.00322 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00080 * 174.52882 * 7 2 1 9 9 C 1.50702 * 119.99742 * 354.52816 * 7 2 1 10 10 H 1.08996 * 109.47215 * 28.37932 * 9 7 2 11 11 O 1.42898 * 109.46777 * 148.37884 * 9 7 2 12 12 C 1.42900 * 113.99912 * 270.42065 * 11 9 7 13 13 F 1.39903 * 109.47090 * 299.19047 * 12 11 9 14 14 F 1.39897 * 109.47212 * 59.18779 * 12 11 9 15 15 C 1.50700 * 109.46884 * 268.37463 * 9 7 2 16 16 C 1.38268 * 119.98288 * 100.00551 * 15 9 7 17 17 C 1.38225 * 120.04896 * 179.97438 * 16 15 9 18 18 C 1.38219 * 120.02836 * 359.97438 * 17 16 15 19 19 C 1.38445 * 119.97426 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.02660 * 180.02562 * 19 18 17 21 21 C 1.38176 * 119.98880 * 279.72751 * 15 9 7 22 22 H 0.97002 * 120.00627 * 5.03260 * 1 2 3 23 23 H 1.08997 * 109.47328 * 179.18948 * 12 11 9 24 24 H 1.07998 * 119.97591 * 359.97438 * 16 15 9 25 25 H 1.08000 * 119.98848 * 180.02562 * 17 16 15 26 26 H 1.07996 * 120.01726 * 180.02562 * 18 17 16 27 27 H 1.07997 * 120.01199 * 0.02562 * 21 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0808 -1.1961 -0.0886 9 6 1.2562 -2.4961 0.1256 10 1 0.2542 -2.3804 -0.2876 11 8 1.9527 -3.5165 -0.5925 12 6 1.5595 -3.6357 -1.9612 13 9 0.1999 -3.9583 -2.0294 14 9 1.7841 -2.4213 -2.6183 15 6 1.1589 -2.8819 1.5791 16 6 -0.0065 -2.6382 2.2822 17 6 -0.0974 -2.9920 3.6153 18 6 0.9766 -3.5904 4.2469 19 6 2.1440 -3.8349 3.5440 20 9 3.1942 -4.4202 4.1602 21 6 2.2322 -3.4842 2.2071 22 1 -0.4851 0.8368 -0.0737 23 1 2.1438 -4.4214 -2.4400 24 1 -0.8463 -2.1711 1.7894 25 1 -1.0083 -2.8016 4.1634 26 1 0.9052 -3.8671 5.2884 27 1 3.1409 -3.6781 1.6567 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261195803.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:17 Heat of formation + Delta-G solvation = -202.195263 kcal Electronic energy + Delta-G solvation = -17900.630091 eV Core-core repulsion = 14400.366697 eV Total energy + Delta-G solvation = -3500.263394 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.80365 -49.70779 -47.83584 -40.10854 -38.09095 -34.94506 -32.55489 -31.29703 -28.89449 -26.45543 -24.85620 -23.41910 -22.28594 -19.11405 -19.03889 -18.75040 -18.14040 -17.68338 -16.96816 -16.83525 -16.57858 -16.47563 -15.35882 -15.05686 -14.67968 -14.54108 -14.40469 -14.22857 -13.95407 -13.62161 -13.16739 -12.94114 -12.81574 -12.71104 -12.54500 -12.38928 -12.02554 -11.69947 -10.96164 -10.71647 -9.74870 -9.46847 -8.25886 -6.40390 0.35201 0.44451 1.38842 1.39963 1.47356 2.31874 2.51699 2.81391 3.06322 3.07727 3.38313 3.95932 3.98771 4.09045 4.16609 4.40820 4.57730 4.60156 4.89013 5.12229 5.22080 5.28644 5.47624 5.60510 5.69460 5.91473 6.02704 6.12309 6.73828 7.28557 8.78128 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.010432 C = 0.007958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.904430 B = 2683.304759 C = 3517.603775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.032 3.968 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.232 3.768 10 H 0.043 0.957 11 O -0.408 6.408 12 C 0.400 3.600 13 F -0.230 7.230 14 F -0.220 7.220 15 C -0.032 4.032 16 C -0.131 4.131 17 C -0.087 4.087 18 C -0.164 4.164 19 C 0.078 3.922 20 F -0.148 7.148 21 C -0.153 4.153 22 H 0.270 0.730 23 H 0.209 0.791 24 H 0.116 0.884 25 H 0.162 0.838 26 H 0.162 0.838 27 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.644 -6.540 2.965 7.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.171 4.171 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.073 0.927 9 C 0.177 3.823 10 H 0.061 0.939 11 O -0.331 6.331 12 C 0.309 3.691 13 F -0.212 7.212 14 F -0.202 7.202 15 C -0.033 4.033 16 C -0.150 4.150 17 C -0.104 4.104 18 C -0.182 4.182 19 C 0.059 3.941 20 F -0.126 7.126 21 C -0.172 4.172 22 H 0.079 0.921 23 H 0.225 0.775 24 H 0.135 0.865 25 H 0.180 0.820 26 H 0.180 0.820 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.627 -6.525 3.120 7.260 hybrid contribution 0.332 1.174 -0.413 1.288 sum 0.959 -5.351 2.706 6.073 Atomic orbital electron populations 1.69936 1.06979 1.28582 1.48671 1.25632 0.95751 1.02359 0.93316 0.85643 0.78640 0.78765 0.78915 1.19634 1.20144 1.19647 1.21425 0.93797 0.90771 1.51962 0.92668 1.18783 0.93394 0.84410 0.85717 0.93899 1.88160 1.65020 1.58197 1.21706 1.23716 0.78057 0.84736 0.82572 1.92975 1.39351 1.92689 1.96198 1.93041 1.94250 1.51281 1.81661 1.20095 0.92914 0.93288 0.97014 1.21170 0.97525 1.00574 0.95700 1.21230 0.99285 0.96567 0.93343 1.21278 0.91853 1.03403 1.01706 1.17814 0.85620 0.99474 0.91183 1.91430 1.56263 1.82122 1.82834 1.20866 1.00243 1.02616 0.93454 0.92066 0.77470 0.86549 0.82039 0.82048 0.85918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.99 12.81 21.45 0.27 -49.71 15 2 C 0.03 1.70 5.45 84.65 0.46 2.16 15 3 Si 0.96 43.10 29.54 68.60 2.03 45.13 15 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 7 C -0.54 -29.51 7.74 25.60 0.20 -29.31 15 8 H 0.06 3.05 7.82 -2.91 -0.02 3.03 15 9 C 0.23 11.68 2.21 29.10 0.06 11.75 15 10 H 0.04 2.39 6.28 -2.39 -0.02 2.38 15 11 O -0.41 -18.21 9.59 -148.98 -1.43 -19.64 15 12 C 0.40 15.04 6.26 113.37 0.71 15.75 15 13 F -0.23 -9.23 16.67 44.97 0.75 -8.48 15 14 F -0.22 -9.71 16.35 44.97 0.74 -8.97 15 15 C -0.03 -1.48 4.96 -19.87 -0.10 -1.58 15 16 C -0.13 -5.44 9.67 22.27 0.22 -5.23 15 17 C -0.09 -2.80 10.04 22.26 0.22 -2.57 15 18 C -0.16 -5.09 10.03 22.31 0.22 -4.86 15 19 C 0.08 2.85 7.30 22.38 0.16 3.01 15 20 F -0.15 -5.13 17.27 44.97 0.78 -4.35 15 21 C -0.15 -6.42 9.33 22.31 0.21 -6.21 15 22 H 0.27 14.17 8.32 -92.71 -0.77 13.40 15 23 H 0.21 5.00 8.14 -2.39 -0.02 4.98 15 24 H 0.12 5.13 8.04 -2.91 -0.02 5.10 15 25 H 0.16 3.92 8.06 -2.91 -0.02 3.90 15 26 H 0.16 3.76 8.06 -2.91 -0.02 3.73 15 27 H 0.12 5.19 7.77 -2.91 -0.02 5.16 15 Total: -1.00 -62.13 259.03 6.70 -55.43 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: 1.20 Total: 7.70 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 2.37 Total: -17.09 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.27 Total: -49.71 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -1.43 Total: -19.64 kcal Atomic # 9 Polarization: -24.07 SS G_CDS: 2.26 Total: -21.81 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -62.13 6.70 -55.43 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261195803.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.768 kcal (2) G-P(sol) polarization free energy of solvation -62.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds