Wall clock time and date at job start Mon Mar 30 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48491 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.46809 * 60.00013 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 O 1.42898 * 109.46964 * 300.00198 * 9 7 2 12 12 C 1.42902 * 113.99874 * 150.00106 * 11 9 7 13 13 F 1.39899 * 109.46913 * 299.99912 * 12 11 9 14 14 F 1.39907 * 109.47182 * 59.99827 * 12 11 9 15 15 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 16 16 C 1.38263 * 119.98428 * 84.72598 * 15 9 7 17 17 C 1.38230 * 120.04779 * 179.72871 * 16 15 9 18 18 C 1.38213 * 120.02556 * 0.54521 * 17 16 15 19 19 C 1.38445 * 119.97543 * 359.72804 * 18 17 16 20 20 F 1.35097 * 120.02574 * 180.02562 * 19 18 17 21 21 C 1.38172 * 119.98679 * 265.00429 * 15 9 7 22 22 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47118 * 179.97438 * 12 11 9 24 24 H 1.07997 * 119.98288 * 359.97438 * 16 15 9 25 25 H 1.07999 * 119.98768 * 180.27451 * 17 16 15 26 26 H 1.07995 * 120.01758 * 179.70655 * 18 17 16 27 27 H 1.08003 * 120.01685 * 0.02562 * 21 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 0.4299 -2.5750 1.1665 12 6 -0.7637 -3.3405 0.9886 13 9 -1.5388 -2.7668 -0.0249 14 9 -0.4284 -4.6516 0.6338 15 6 2.2303 -3.6447 -0.0005 16 6 2.7629 -4.0984 1.1920 17 6 3.6570 -5.1526 1.1940 18 6 4.0280 -5.7471 0.0027 19 6 3.4996 -5.2899 -1.1925 20 9 3.8612 -5.8706 -2.3575 21 6 2.5998 -4.2373 -1.1928 22 1 -0.4849 0.8401 0.0004 23 1 -1.3312 -3.3501 1.9192 24 1 2.4773 -3.6314 2.1230 25 1 4.0690 -5.5091 2.1265 26 1 4.7301 -6.5676 0.0041 27 1 2.1873 -3.8795 -2.1246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261195804.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:19 Heat of formation + Delta-G solvation = -184.473286 kcal Electronic energy + Delta-G solvation = -18012.462301 eV Core-core repulsion = 14512.967390 eV Total energy + Delta-G solvation = -3499.494911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.44007 -47.99600 -46.08937 -38.63955 -36.19167 -32.75325 -31.15417 -29.86683 -27.18508 -24.41416 -23.28004 -22.13240 -20.55950 -17.46067 -17.26865 -16.86496 -16.42935 -15.89434 -15.60504 -15.51392 -15.11847 -14.69621 -13.69499 -13.40055 -13.14889 -12.87382 -12.81372 -12.47852 -12.33103 -11.75294 -11.37835 -11.31352 -11.15147 -10.99334 -10.83746 -10.65167 -10.34149 -9.61406 -9.17872 -8.65519 -8.34562 -8.03312 -6.22674 -4.37924 1.75607 1.80733 3.20381 3.29105 3.33563 4.15812 4.20158 4.37039 4.65999 4.82854 5.25432 5.33939 5.37793 5.55800 5.68345 5.83808 5.93670 6.00856 6.41415 6.57918 6.66616 6.78626 6.89816 7.17812 7.47784 7.68293 7.87752 8.18975 8.69454 9.32905 10.82957 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.009632 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.094320 B = 2906.395119 C = 3705.289003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.079 3.921 3 Si 0.901 3.099 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.524 4.524 8 H 0.071 0.929 9 C 0.242 3.758 10 H 0.045 0.955 11 O -0.362 6.362 12 C 0.393 3.607 13 F -0.205 7.205 14 F -0.229 7.229 15 C -0.038 4.038 16 C -0.109 4.109 17 C -0.100 4.100 18 C -0.175 4.175 19 C 0.087 3.913 20 F -0.150 7.150 21 C -0.148 4.148 22 H 0.266 0.734 23 H 0.136 0.864 24 H 0.130 0.870 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -7.297 2.355 7.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.129 4.129 3 Si 0.728 3.272 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.561 4.561 8 H 0.089 0.911 9 C 0.187 3.813 10 H 0.062 0.938 11 O -0.283 6.283 12 C 0.300 3.700 13 F -0.187 7.187 14 F -0.212 7.212 15 C -0.039 4.039 16 C -0.128 4.128 17 C -0.118 4.118 18 C -0.194 4.194 19 C 0.068 3.932 20 F -0.129 7.129 21 C -0.167 4.167 22 H 0.075 0.925 23 H 0.153 0.847 24 H 0.148 0.852 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.876 -7.138 2.438 7.773 hybrid contribution 0.348 0.585 -0.483 0.835 sum 2.224 -6.553 1.954 7.191 Atomic orbital electron populations 1.70035 1.05996 1.27224 1.45468 1.25102 0.94942 0.99588 0.93277 0.86390 0.80226 0.82753 0.77824 1.19422 1.20678 1.20613 1.20943 0.93073 0.88234 1.53801 0.91125 1.18935 0.86447 0.90578 0.85308 0.93769 1.88698 1.30607 1.68847 1.40143 1.22907 0.85771 0.73171 0.88193 1.93037 1.75802 1.84678 1.65207 1.93002 1.93284 1.40818 1.94065 1.20865 0.96390 0.94847 0.91787 1.21074 0.96565 0.96222 0.98902 1.20921 0.97719 0.96260 0.96915 1.20901 1.03729 1.03060 0.91688 1.17664 0.98987 0.95437 0.81115 1.91433 1.90767 1.83572 1.47128 1.20978 0.99559 0.96335 0.99860 0.92450 0.84730 0.85218 0.85867 0.85838 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.42 12.84 55.43 0.71 -22.71 15 2 C 0.08 2.09 5.40 -17.82 -0.10 1.99 15 3 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 15 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 15 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.52 -13.89 8.78 -34.44 -0.30 -14.19 15 8 H 0.07 1.86 7.74 -52.49 -0.41 1.46 15 9 C 0.24 5.94 1.97 -29.03 -0.06 5.88 15 10 H 0.04 1.19 7.11 -51.93 -0.37 0.82 15 11 O -0.36 -8.57 8.84 -35.23 -0.31 -8.88 15 12 C 0.39 7.97 6.26 101.05 0.63 8.60 15 13 F -0.21 -4.67 16.63 2.25 0.04 -4.63 15 14 F -0.23 -4.60 16.41 2.25 0.04 -4.57 15 15 C -0.04 -0.83 4.06 -104.64 -0.42 -1.25 15 16 C -0.11 -2.10 9.35 -39.58 -0.37 -2.47 15 17 C -0.10 -1.62 10.04 -39.59 -0.40 -2.01 15 18 C -0.17 -2.84 10.03 -39.51 -0.40 -3.24 15 19 C 0.09 1.60 7.30 -39.42 -0.29 1.31 15 20 F -0.15 -2.67 17.27 2.25 0.04 -2.63 15 21 C -0.15 -3.00 9.66 -39.52 -0.38 -3.38 15 22 H 0.27 6.91 8.31 -40.82 -0.34 6.57 15 23 H 0.14 2.14 8.14 -51.93 -0.42 1.72 15 24 H 0.13 2.45 7.63 -52.49 -0.40 2.05 15 25 H 0.12 1.57 8.06 -52.49 -0.42 1.15 15 26 H 0.12 1.65 8.06 -52.49 -0.42 1.23 15 27 H 0.13 2.55 8.06 -52.48 -0.42 2.13 15 LS Contribution 258.80 15.07 3.90 3.90 Total: -1.00 -28.54 258.80 -4.69 -33.23 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -2.00 Total: -0.31 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -2.08 Total: -8.77 kcal Atomic # 7 Polarization: -23.42 SS G_CDS: 0.71 Total: -22.71 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.31 Total: -8.88 kcal Atomic # 9 Polarization: -11.94 SS G_CDS: 0.11 Total: -11.83 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.54 -4.69 -33.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261195804.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.241 kcal (2) G-P(sol) polarization free energy of solvation -28.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds