Wall clock time and date at job start Mon Mar 30 2020 06:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00376 * 2 1 4 4 H 1.48491 * 109.47312 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46948 * 300.00094 * 3 2 1 6 6 H 1.48500 * 109.46809 * 60.00013 * 3 2 1 7 7 C 1.37877 * 119.99723 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99852 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00129 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 60.00169 * 9 7 2 11 11 O 1.42898 * 109.46964 * 300.00198 * 9 7 2 12 12 C 1.42902 * 113.99874 * 150.00106 * 11 9 7 13 13 F 1.39899 * 109.46913 * 299.99912 * 12 11 9 14 14 F 1.39907 * 109.47182 * 59.99827 * 12 11 9 15 15 C 1.50703 * 109.47227 * 180.02562 * 9 7 2 16 16 C 1.38263 * 119.98428 * 84.72598 * 15 9 7 17 17 C 1.38230 * 120.04779 * 179.72871 * 16 15 9 18 18 C 1.38213 * 120.02556 * 0.54521 * 17 16 15 19 19 C 1.38445 * 119.97543 * 359.72804 * 18 17 16 20 20 F 1.35097 * 120.02574 * 180.02562 * 19 18 17 21 21 C 1.38172 * 119.98679 * 265.00429 * 15 9 7 22 22 H 0.97003 * 119.99231 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47118 * 179.97438 * 12 11 9 24 24 H 1.07997 * 119.98288 * 359.97438 * 16 15 9 25 25 H 1.07999 * 119.98768 * 180.27451 * 17 16 15 26 26 H 1.07995 * 120.01758 * 179.70655 * 18 17 16 27 27 H 1.08003 * 120.01685 * 0.02562 * 21 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8903 11 8 0.4299 -2.5750 1.1665 12 6 -0.7637 -3.3405 0.9886 13 9 -1.5388 -2.7668 -0.0249 14 9 -0.4284 -4.6516 0.6338 15 6 2.2303 -3.6447 -0.0005 16 6 2.7629 -4.0984 1.1920 17 6 3.6570 -5.1526 1.1940 18 6 4.0280 -5.7471 0.0027 19 6 3.4996 -5.2899 -1.1925 20 9 3.8612 -5.8706 -2.3575 21 6 2.5998 -4.2373 -1.1928 22 1 -0.4849 0.8401 0.0004 23 1 -1.3312 -3.3501 1.9192 24 1 2.4773 -3.6314 2.1230 25 1 4.0690 -5.5091 2.1265 26 1 4.7301 -6.5676 0.0041 27 1 2.1873 -3.8795 -2.1246 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261195804.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:19 Heat of formation + Delta-G solvation = -200.804652 kcal Electronic energy + Delta-G solvation = -18013.170483 eV Core-core repulsion = 14512.967390 eV Total energy + Delta-G solvation = -3500.203092 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.85997 -49.67267 -47.78883 -40.16455 -37.91891 -34.71767 -32.73819 -31.32450 -28.97547 -26.17714 -24.98706 -23.56581 -22.16583 -19.27774 -18.92660 -18.53103 -18.11079 -17.61279 -17.06895 -16.97118 -16.55710 -16.51902 -15.25119 -15.15193 -14.67623 -14.63052 -14.39311 -14.17946 -13.93084 -13.37041 -13.15821 -12.95407 -12.79614 -12.68034 -12.37442 -12.32263 -12.18803 -11.51378 -10.96688 -10.62259 -9.82412 -9.51574 -8.22292 -6.45148 0.30323 0.37236 1.41322 1.43701 1.55738 2.36171 2.59192 2.79586 2.97314 3.29439 3.46070 3.88451 3.96454 4.01546 4.20134 4.30977 4.43014 4.55107 4.84201 5.00730 5.18375 5.20787 5.44633 5.60713 5.68470 5.93115 6.07841 6.35418 6.66874 7.29402 8.83044 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.019824 B = 0.009632 C = 0.007555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.094320 B = 2906.395119 C = 3705.289003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.032 3.968 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.249 3.751 10 H 0.006 0.994 11 O -0.377 6.377 12 C 0.387 3.613 13 F -0.223 7.223 14 F -0.228 7.228 15 C -0.064 4.064 16 C -0.119 4.119 17 C -0.083 4.083 18 C -0.159 4.159 19 C 0.081 3.919 20 F -0.148 7.148 21 C -0.170 4.170 22 H 0.267 0.733 23 H 0.188 0.812 24 H 0.128 0.872 25 H 0.169 0.831 26 H 0.164 0.836 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 -8.326 3.659 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.172 4.172 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.194 3.806 10 H 0.024 0.976 11 O -0.298 6.298 12 C 0.295 3.705 13 F -0.205 7.205 14 F -0.211 7.211 15 C -0.064 4.064 16 C -0.138 4.138 17 C -0.101 4.101 18 C -0.178 4.178 19 C 0.062 3.938 20 F -0.127 7.127 21 C -0.189 4.189 22 H 0.076 0.924 23 H 0.204 0.796 24 H 0.146 0.854 25 H 0.186 0.814 26 H 0.181 0.819 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.357 -8.179 3.739 9.599 hybrid contribution -0.110 0.790 -0.894 1.199 sum 3.247 -7.389 2.845 8.557 Atomic orbital electron populations 1.70138 1.07266 1.28001 1.46511 1.25882 0.95752 1.02782 0.92813 0.85396 0.78974 0.78655 0.77944 1.19062 1.20310 1.19946 1.21206 0.93025 0.89749 1.54134 0.91775 1.18549 0.86512 0.91497 0.84041 0.97624 1.88586 1.31837 1.69912 1.39488 1.23601 0.84910 0.72560 0.89457 1.93000 1.76081 1.85071 1.66370 1.92993 1.93291 1.40558 1.94222 1.20611 0.97350 0.95099 0.93353 1.21179 0.97451 0.97393 0.97741 1.21351 0.95696 0.94241 0.98798 1.21359 1.02912 1.03103 0.90411 1.17774 0.98826 0.95037 0.82155 1.91437 1.90643 1.83352 1.47256 1.20955 1.00991 0.97774 0.99149 0.92366 0.79601 0.85391 0.81362 0.81871 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -49.65 12.84 21.45 0.28 -49.37 15 2 C 0.03 1.74 5.40 84.65 0.46 2.20 15 3 Si 0.97 42.26 29.54 68.60 2.03 44.28 15 4 H -0.27 -11.37 7.11 99.48 0.71 -10.67 15 5 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 15 7 C -0.54 -29.67 8.78 25.60 0.22 -29.44 15 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 15 9 C 0.25 12.65 1.97 29.10 0.06 12.70 15 10 H 0.01 0.34 7.11 -2.39 -0.02 0.33 15 11 O -0.38 -18.11 8.84 -148.98 -1.32 -19.43 15 12 C 0.39 15.66 6.26 113.37 0.71 16.37 15 13 F -0.22 -10.38 16.63 44.97 0.75 -9.63 15 14 F -0.23 -9.12 16.41 44.97 0.74 -8.38 15 15 C -0.06 -2.77 4.06 -19.87 -0.08 -2.85 15 16 C -0.12 -4.41 9.35 22.27 0.21 -4.20 15 17 C -0.08 -2.36 10.04 22.26 0.22 -2.14 15 18 C -0.16 -4.55 10.03 22.31 0.22 -4.33 15 19 C 0.08 2.85 7.30 22.38 0.16 3.01 15 20 F -0.15 -5.04 17.27 44.97 0.78 -4.26 15 21 C -0.17 -6.98 9.66 22.31 0.22 -6.76 15 22 H 0.27 14.15 8.31 -92.71 -0.77 13.38 15 23 H 0.19 5.56 8.14 -2.39 -0.02 5.54 15 24 H 0.13 4.70 7.63 -2.91 -0.02 4.68 15 25 H 0.17 3.30 8.06 -2.91 -0.02 3.27 15 26 H 0.16 3.42 8.06 -2.91 -0.02 3.39 15 27 H 0.12 4.90 8.06 -2.91 -0.02 4.88 15 Total: -1.00 -62.94 258.80 6.85 -56.10 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.20 Total: 6.15 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 2.40 Total: -15.45 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.28 Total: -49.37 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -1.32 Total: -19.43 kcal Atomic # 9 Polarization: -24.54 SS G_CDS: 2.26 Total: -22.28 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.28 kcal Total: -62.94 6.85 -56.10 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261195804.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.709 kcal (2) G-P(sol) polarization free energy of solvation -62.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds