Wall clock time and date at job start Mon Mar 30 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48498 * 109.46870 * 270.00023 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99802 * 3 2 1 6 6 H 1.48498 * 109.47634 * 150.00038 * 3 2 1 7 7 C 1.39723 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99658 * 179.97438 * 7 2 1 9 9 C 1.41224 * 120.00120 * 0.28313 * 7 2 1 10 10 C 1.39091 * 126.44219 * 179.72183 * 9 7 2 11 11 N 1.36101 * 106.36950 * 179.97438 * 10 9 7 12 12 C 1.46504 * 126.10694 * 180.02562 * 11 10 9 13 13 C 1.52998 * 117.49797 * 8.71768 * 12 11 10 14 14 C 1.53005 * 117.49226 * 300.06136 * 12 11 10 15 15 C 1.35959 * 107.78324 * 359.97438 * 11 10 9 16 16 C 1.50697 * 125.20423 * 179.97438 * 15 11 10 17 17 F 1.39899 * 109.47532 * 195.00561 * 16 15 11 18 18 F 1.39906 * 109.47012 * 315.00279 * 16 15 11 19 19 F 1.39901 * 109.47348 * 75.00117 * 16 15 11 20 20 N 1.30154 * 109.59637 * 359.72706 * 15 11 10 21 21 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 22 22 H 1.08001 * 126.81151 * 0.02562 * 10 9 7 23 23 H 1.08992 * 115.54858 * 154.39525 * 12 11 10 24 24 H 1.09001 * 117.49901 * 0.02562 * 13 12 11 25 25 H 1.09002 * 117.49856 * 145.02421 * 13 12 11 26 26 H 1.09003 * 117.49308 * 214.98200 * 14 12 11 27 27 H 1.08994 * 117.50140 * 359.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 2.4917 2.0462 -1.4001 5 1 1.4417 2.6526 0.7000 6 1 3.5418 1.4401 0.7000 7 6 2.0087 -1.2101 0.0005 8 1 3.0887 -1.2100 0.0001 9 6 1.3026 -2.4331 -0.0050 10 6 1.8585 -3.7081 -0.0106 11 7 0.8148 -4.5816 -0.0140 12 6 0.9124 -6.0433 -0.0197 13 6 2.2980 -6.6596 0.1835 14 6 1.6378 -6.6982 -1.1970 15 6 -0.3345 -3.8553 -0.0099 16 6 -1.7267 -4.4321 -0.0123 17 9 -2.6454 -3.4320 -0.3484 18 9 -1.8009 -5.4677 -0.9501 19 9 -2.0265 -4.9323 1.2594 20 7 -0.0486 -2.5856 0.0016 21 1 -0.4850 0.8400 -0.0004 22 1 2.9097 -3.9557 -0.0112 23 1 0.0589 -6.5731 0.4032 24 1 3.1368 -5.9775 0.3219 25 1 2.3560 -7.5951 0.7399 26 1 1.2617 -7.6590 -1.5483 27 1 2.0419 -6.0415 -1.9674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261219362.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:15 Heat of formation + Delta-G solvation = -64.276592 kcal Electronic energy + Delta-G solvation = -18062.324734 eV Core-core repulsion = 14600.334694 eV Total energy + Delta-G solvation = -3461.990040 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.58025 -47.16593 -47.00971 -40.50489 -36.77062 -33.32640 -30.60916 -29.62929 -26.42010 -24.47851 -22.37395 -22.04089 -20.18689 -19.56826 -18.01849 -17.87995 -17.45749 -16.50088 -15.18974 -14.94410 -14.67943 -14.16951 -13.89579 -13.57988 -13.55021 -13.29772 -13.20433 -13.06104 -12.62585 -12.42472 -11.72244 -11.46932 -11.18978 -11.00581 -10.70296 -10.51753 -10.39893 -10.03522 -9.22565 -8.42780 -8.20811 -7.38970 -6.32125 -4.17131 2.76077 3.04452 3.16281 3.22650 3.25633 3.55653 3.95873 4.15516 4.29334 4.31103 4.73290 4.83972 4.93294 4.97993 5.14325 5.62749 5.63930 5.69802 5.98306 6.12032 6.22628 6.87587 7.26479 7.44345 7.55859 8.12942 8.43147 8.89730 9.10373 9.59790 10.62036 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.008680 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.567325 B = 3225.153650 C = 4108.287444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.200 3.800 10 C -0.183 4.183 11 N -0.411 5.411 12 C 0.063 3.937 13 C -0.174 4.174 14 C -0.181 4.181 15 C 0.065 3.935 16 C 0.562 3.438 17 F -0.156 7.156 18 F -0.184 7.184 19 F -0.183 7.183 20 N -0.403 5.403 21 H 0.271 0.729 22 H 0.155 0.845 23 H 0.127 0.873 24 H 0.105 0.895 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.520 -10.128 -0.388 10.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.075 3.925 10 C -0.312 4.312 11 N -0.101 5.101 12 C -0.043 4.043 13 C -0.212 4.212 14 C -0.220 4.220 15 C -0.192 4.192 16 C 0.506 3.494 17 F -0.137 7.137 18 F -0.166 7.166 19 F -0.164 7.164 20 N -0.127 5.127 21 H 0.081 0.919 22 H 0.172 0.828 23 H 0.144 0.856 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.120 0.880 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.312 -9.484 -0.366 9.496 hybrid contribution 0.760 -0.052 -0.009 0.762 sum 0.448 -9.536 -0.375 9.554 Atomic orbital electron populations 1.70066 1.06733 1.27585 1.34946 1.25803 0.94805 1.00454 0.93449 0.86368 0.80172 0.81537 0.78783 1.19849 1.20539 1.18962 1.18462 0.93439 0.88006 1.48961 0.90096 1.18480 0.86317 0.91479 0.96187 1.22562 0.91381 0.89264 1.27962 1.43844 1.05870 1.03387 1.56972 1.21761 0.97747 0.80339 1.04430 1.23301 0.95628 1.02561 0.99669 1.23414 1.03815 1.02469 0.92307 1.22511 0.86186 0.90276 1.20180 1.16868 0.84511 0.74861 0.73171 1.93217 1.67722 1.60754 1.92034 1.93161 1.96892 1.60362 1.66186 1.93179 1.94288 1.88027 1.40942 1.71156 1.16255 1.08843 1.16486 0.91874 0.82794 0.85559 0.87702 0.87871 0.87994 0.87978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.88 11.94 55.54 0.66 -21.22 15 2 C 0.07 2.00 5.49 -17.35 -0.10 1.91 15 3 Si 0.91 19.71 29.56 -169.99 -5.02 14.68 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 15 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 7 C -0.45 -12.51 9.38 -37.89 -0.36 -12.86 15 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 15 9 C 0.20 5.52 6.69 -84.58 -0.57 4.95 15 10 C -0.18 -4.28 10.91 -15.34 -0.17 -4.45 15 11 N -0.41 -8.85 3.08 -105.63 -0.33 -9.18 15 12 C 0.06 1.03 5.91 -67.93 -0.40 0.63 15 13 C -0.17 -2.26 9.98 -26.69 -0.27 -2.52 15 14 C -0.18 -2.44 10.40 -26.69 -0.28 -2.71 15 15 C 0.07 1.57 7.21 -154.86 -1.12 0.46 15 16 C 0.56 11.71 3.18 36.00 0.11 11.83 15 17 F -0.16 -3.44 17.14 2.25 0.04 -3.40 15 18 F -0.18 -3.40 16.21 2.25 0.04 -3.36 15 19 F -0.18 -3.55 17.30 2.25 0.04 -3.51 15 20 N -0.40 -11.35 9.29 -8.18 -0.08 -11.42 15 21 H 0.27 7.09 8.30 -40.82 -0.34 6.76 15 22 H 0.15 3.17 7.10 -52.49 -0.37 2.80 15 23 H 0.13 1.89 7.71 -51.93 -0.40 1.49 15 24 H 0.10 1.43 6.87 -51.93 -0.36 1.08 15 25 H 0.10 1.06 8.14 -51.93 -0.42 0.64 15 26 H 0.10 1.10 8.14 -51.93 -0.42 0.68 15 27 H 0.10 1.50 8.14 -51.93 -0.42 1.08 15 LS Contribution 257.22 15.07 3.88 3.88 Total: -1.00 -30.57 257.22 -5.85 -36.41 By element: Atomic # 1 Polarization: 1.85 SS G_CDS: -1.94 Total: -0.10 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -3.13 Total: -2.78 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.26 Total: -41.82 kcal Atomic # 9 Polarization: -10.38 SS G_CDS: 0.11 Total: -10.27 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.57 -5.85 -36.41 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219362.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.866 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds