Wall clock time and date at job start Mon Mar 30 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86794 * 120.00321 * 2 1 4 4 H 1.48498 * 109.46870 * 270.00023 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99802 * 3 2 1 6 6 H 1.48498 * 109.47634 * 150.00038 * 3 2 1 7 7 C 1.39723 * 119.99802 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99658 * 179.97438 * 7 2 1 9 9 C 1.41224 * 120.00120 * 0.28313 * 7 2 1 10 10 C 1.39091 * 126.44219 * 179.72183 * 9 7 2 11 11 N 1.36101 * 106.36950 * 179.97438 * 10 9 7 12 12 C 1.46504 * 126.10694 * 180.02562 * 11 10 9 13 13 C 1.52998 * 117.49797 * 8.71768 * 12 11 10 14 14 C 1.53005 * 117.49226 * 300.06136 * 12 11 10 15 15 C 1.35959 * 107.78324 * 359.97438 * 11 10 9 16 16 C 1.50697 * 125.20423 * 179.97438 * 15 11 10 17 17 F 1.39899 * 109.47532 * 195.00561 * 16 15 11 18 18 F 1.39906 * 109.47012 * 315.00279 * 16 15 11 19 19 F 1.39901 * 109.47348 * 75.00117 * 16 15 11 20 20 N 1.30154 * 109.59637 * 359.72706 * 15 11 10 21 21 H 0.96996 * 120.00096 * 0.02562 * 1 2 3 22 22 H 1.08001 * 126.81151 * 0.02562 * 10 9 7 23 23 H 1.08992 * 115.54858 * 154.39525 * 12 11 10 24 24 H 1.09001 * 117.49901 * 0.02562 * 13 12 11 25 25 H 1.09002 * 117.49856 * 145.02421 * 13 12 11 26 26 H 1.09003 * 117.49308 * 214.98200 * 14 12 11 27 27 H 1.08994 * 117.50140 * 359.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 2.4917 2.0462 -1.4001 5 1 1.4417 2.6526 0.7000 6 1 3.5418 1.4401 0.7000 7 6 2.0087 -1.2101 0.0005 8 1 3.0887 -1.2100 0.0001 9 6 1.3026 -2.4331 -0.0050 10 6 1.8585 -3.7081 -0.0106 11 7 0.8148 -4.5816 -0.0140 12 6 0.9124 -6.0433 -0.0197 13 6 2.2980 -6.6596 0.1835 14 6 1.6378 -6.6982 -1.1970 15 6 -0.3345 -3.8553 -0.0099 16 6 -1.7267 -4.4321 -0.0123 17 9 -2.6454 -3.4320 -0.3484 18 9 -1.8009 -5.4677 -0.9501 19 9 -2.0265 -4.9323 1.2594 20 7 -0.0486 -2.5856 0.0016 21 1 -0.4850 0.8400 -0.0004 22 1 2.9097 -3.9557 -0.0112 23 1 0.0589 -6.5731 0.4032 24 1 3.1368 -5.9775 0.3219 25 1 2.3560 -7.5951 0.7399 26 1 1.2617 -7.6590 -1.5483 27 1 2.0419 -6.0415 -1.9674 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261219362.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:14 Heat of formation + Delta-G solvation = -82.116796 kcal Electronic energy + Delta-G solvation = -18063.098343 eV Core-core repulsion = 14600.334694 eV Total energy + Delta-G solvation = -3462.763649 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.22739 -48.75946 -48.70562 -42.28681 -38.07882 -35.23568 -32.36437 -31.48698 -28.30888 -26.22526 -23.59190 -23.43091 -22.02105 -21.25893 -19.66056 -19.54013 -19.05131 -18.40417 -16.81124 -16.53269 -16.18654 -15.77440 -15.55012 -15.23865 -15.17177 -14.90732 -14.87435 -14.77341 -14.40431 -13.89570 -13.42892 -12.91835 -12.78282 -12.46965 -12.36898 -12.13922 -11.82742 -11.64436 -11.06241 -10.31906 -9.95206 -9.32137 -8.26693 -6.19067 1.01651 1.34388 1.45119 1.45886 1.59140 1.96741 2.34717 2.36557 2.62154 2.77633 3.14094 3.33562 3.59444 3.64497 3.82579 3.94627 4.27338 4.65455 4.74412 4.88084 5.04448 5.14854 5.34941 5.56797 5.64281 6.26022 6.56915 6.95493 7.11490 7.70709 8.69909 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.008680 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.567325 B = 3225.153650 C = 4108.287444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.023 3.977 3 Si 0.986 3.014 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.254 1.254 7 C -0.488 4.488 8 H 0.089 0.911 9 C 0.150 3.850 10 C -0.158 4.158 11 N -0.399 5.399 12 C 0.016 3.984 13 C -0.150 4.150 14 C -0.164 4.164 15 C 0.043 3.957 16 C 0.574 3.426 17 F -0.166 7.166 18 F -0.167 7.167 19 F -0.173 7.173 20 N -0.456 5.456 21 H 0.271 0.729 22 H 0.183 0.817 23 H 0.141 0.859 24 H 0.098 0.902 25 H 0.140 0.860 26 H 0.135 0.865 27 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.893 -11.946 -0.422 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.178 1.178 7 C -0.523 4.523 8 H 0.107 0.893 9 C 0.024 3.976 10 C -0.290 4.290 11 N -0.085 5.085 12 C -0.087 4.087 13 C -0.187 4.187 14 C -0.202 4.202 15 C -0.214 4.214 16 C 0.517 3.483 17 F -0.148 7.148 18 F -0.148 7.148 19 F -0.154 7.154 20 N -0.181 5.181 21 H 0.081 0.919 22 H 0.200 0.800 23 H 0.158 0.842 24 H 0.117 0.883 25 H 0.158 0.842 26 H 0.153 0.847 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.061 -11.382 -0.403 11.438 hybrid contribution 0.377 0.256 -0.009 0.456 sum 1.438 -11.125 -0.413 11.225 Atomic orbital electron populations 1.70223 1.08642 1.28429 1.37176 1.26752 0.95585 1.04220 0.92576 0.85163 0.78831 0.76325 0.78951 1.19221 1.20288 1.17765 1.18870 0.94045 0.89066 1.50355 0.89270 1.18996 0.86932 0.93263 0.98385 1.22932 0.92857 0.88570 1.24605 1.44093 1.04501 1.05691 1.54259 1.22335 1.00746 0.77223 1.08428 1.23469 0.92736 1.03163 0.99326 1.23505 1.02101 1.02928 0.91698 1.22890 0.88093 0.90060 1.20351 1.16500 0.83035 0.74944 0.73790 1.93195 1.67872 1.61510 1.92183 1.93187 1.96729 1.59313 1.65570 1.93192 1.94082 1.87783 1.40372 1.71017 1.17058 1.11417 1.18644 0.91909 0.79954 0.84185 0.88315 0.84233 0.84659 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.53 11.94 21.79 0.26 -48.27 15 2 C 0.02 1.28 5.49 85.17 0.47 1.74 15 3 Si 0.99 41.32 29.56 68.60 2.03 43.35 15 4 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 5 H -0.28 -11.37 7.11 99.48 0.71 -10.66 15 6 H -0.25 -10.02 7.11 99.48 0.71 -9.32 15 7 C -0.49 -27.58 9.38 23.36 0.22 -27.36 15 8 H 0.09 4.63 7.84 -2.91 -0.02 4.61 15 9 C 0.15 8.48 6.69 39.44 0.26 8.74 15 10 C -0.16 -7.33 10.91 84.24 0.92 -6.41 15 11 N -0.40 -16.75 3.08 -488.09 -1.50 -18.25 15 12 C 0.02 0.48 5.91 44.99 0.27 0.75 15 13 C -0.15 -3.24 9.98 30.62 0.31 -2.94 15 14 C -0.16 -3.77 10.40 30.62 0.32 -3.45 15 15 C 0.04 2.10 7.21 137.93 0.99 3.10 15 16 C 0.57 23.73 3.18 71.23 0.23 23.96 15 17 F -0.17 -7.45 17.14 44.97 0.77 -6.68 15 18 F -0.17 -5.89 16.21 44.97 0.73 -5.16 15 19 F -0.17 -6.57 17.30 44.97 0.78 -5.79 15 20 N -0.46 -26.50 9.29 -179.79 -1.67 -28.17 15 21 H 0.27 14.86 8.30 -92.71 -0.77 14.09 15 22 H 0.18 7.17 7.10 -2.91 -0.02 7.15 15 23 H 0.14 3.75 7.71 -2.39 -0.02 3.73 15 24 H 0.10 2.32 6.87 -2.39 -0.02 2.30 15 25 H 0.14 2.07 8.14 -2.39 -0.02 2.05 15 26 H 0.14 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 Total: -1.00 -69.06 257.22 6.59 -62.48 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 1.21 Total: 8.36 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 3.98 Total: -1.86 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -2.91 Total: -94.69 kcal Atomic # 9 Polarization: -19.91 SS G_CDS: 2.28 Total: -17.63 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -69.06 6.59 -62.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261219362.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.640 kcal (2) G-P(sol) polarization free energy of solvation -69.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds