Wall clock time and date at job start Mon Mar 30 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48501 * 109.46684 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46981 * 299.99262 * 3 2 1 6 6 H 1.48491 * 109.47341 * 60.00126 * 3 2 1 7 7 C 1.39839 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 198.03300 * 7 2 1 9 9 C 1.40929 * 120.00337 * 18.03279 * 7 2 1 10 10 C 1.40989 * 120.09989 * 204.75089 * 9 7 2 11 11 C 1.36126 * 119.89533 * 180.02562 * 10 9 7 12 12 C 1.40141 * 120.10212 * 0.02562 * 11 10 9 13 13 C 1.47630 * 119.90089 * 179.97438 * 12 11 10 14 14 C 1.35208 * 122.46059 * 180.02562 * 13 12 11 15 15 S 1.76192 * 108.24331 * 180.02562 * 14 13 12 16 16 C 1.76057 * 90.15188 * 359.97438 * 15 14 13 17 17 N 1.38322 * 125.20151 * 179.97438 * 16 15 14 18 18 N 1.29653 * 109.59915 * 359.97438 * 16 15 14 19 19 C 1.40144 * 120.20345 * 0.25559 * 12 11 10 20 20 C 1.36126 * 120.10369 * 359.48119 * 19 12 11 21 21 H 0.97000 * 120.00421 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.05254 * 0.02562 * 10 9 7 23 23 H 1.07994 * 119.95257 * 180.02562 * 11 10 9 24 24 H 1.08004 * 125.88027 * 0.02562 * 14 13 12 25 25 H 0.97003 * 119.99665 * 0.02754 * 17 16 15 26 26 H 0.97000 * 119.99681 * 180.02562 * 17 16 15 27 27 H 1.08000 * 119.94815 * 179.74180 * 19 12 11 28 28 H 1.08003 * 120.05252 * 180.26121 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8844 2.3963 -1.2126 6 1 1.8843 2.3964 1.2124 7 6 2.0082 -1.2111 0.0005 8 1 3.0484 -1.2340 0.2901 9 6 1.3555 -2.4018 -0.3767 10 6 1.8268 -3.6454 0.0913 11 6 1.1935 -4.7929 -0.2761 12 6 0.0749 -4.7396 -1.1187 13 6 -0.6082 -5.9869 -1.5149 14 6 -1.6905 -5.9957 -2.3252 15 16 -2.1981 -7.6679 -2.5494 16 6 -0.8823 -8.2112 -1.5135 17 7 -0.6146 -9.5290 -1.1895 18 7 -0.2026 -7.1871 -1.1007 19 6 -0.3936 -3.5062 -1.5912 20 6 0.2301 -2.3530 -1.2247 21 1 -0.4851 0.8400 -0.0004 22 1 2.6890 -3.6875 0.7404 23 1 1.5535 -5.7460 0.0822 24 1 -2.1626 -5.1271 -2.7602 25 1 -1.1741 -10.2384 -1.5424 26 1 0.1327 -9.7436 -0.6095 27 1 -1.2535 -3.4702 -2.2437 28 1 -0.1342 -1.4027 -1.5859 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261342300.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:31 Heat of formation + Delta-G solvation = 55.624081 kcal Electronic energy + Delta-G solvation = -14359.419480 eV Core-core repulsion = 11887.238335 eV Total energy + Delta-G solvation = -2472.181145 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.04706 -37.27568 -34.60719 -33.56642 -30.44530 -29.43968 -28.07582 -25.56089 -23.35713 -21.16334 -20.73926 -19.31661 -17.86335 -17.41673 -16.03938 -15.60118 -15.33344 -14.67859 -14.19598 -13.83698 -13.14118 -12.97840 -12.49216 -11.92518 -11.88852 -11.58685 -11.26442 -11.13665 -10.77253 -10.52553 -10.31846 -9.76811 -9.47704 -9.27102 -9.08008 -8.80342 -7.87891 -7.56522 -6.98624 -6.83548 -4.42300 1.40828 1.51773 2.34643 2.54934 2.99452 3.01650 3.06916 3.15513 3.63389 3.81917 3.87449 4.64521 5.32456 5.69397 6.00011 6.18677 6.31983 6.45694 6.69325 6.92145 6.95119 7.08793 7.17309 7.26203 7.44901 7.57711 7.84930 7.97511 8.05821 8.19835 8.51964 8.55109 8.75566 8.88307 10.00927 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.059436 B = 0.004806 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.984325 B = 5824.877253 C = 6219.094956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.778 5.778 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.445 4.445 8 H 0.083 0.917 9 C 0.122 3.878 10 C -0.236 4.236 11 C -0.040 4.040 12 C -0.183 4.183 13 C 0.203 3.797 14 C -0.320 4.320 15 S -0.008 6.008 16 C 0.346 3.654 17 N -0.824 5.824 18 N -0.537 5.537 19 C -0.067 4.067 20 C -0.175 4.175 21 H 0.284 0.716 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.168 0.832 25 H 0.410 0.590 26 H 0.409 0.591 27 H 0.092 0.908 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.657 -9.776 -3.096 10.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.402 5.402 2 C -0.147 4.147 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.473 4.473 8 H 0.101 0.899 9 C 0.119 3.881 10 C -0.256 4.256 11 C -0.059 4.059 12 C -0.188 4.188 13 C 0.078 3.922 14 C -0.458 4.458 15 S 0.236 5.764 16 C -0.029 4.029 17 N -0.377 5.377 18 N -0.262 5.262 19 C -0.086 4.086 20 C -0.194 4.194 21 H 0.095 0.905 22 H 0.113 0.887 23 H 0.117 0.883 24 H 0.186 0.814 25 H 0.240 0.760 26 H 0.241 0.759 27 H 0.110 0.890 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.236 -10.134 -3.305 11.140 hybrid contribution 0.633 1.096 0.343 1.312 sum -2.603 -9.038 -2.962 9.861 Atomic orbital electron populations 1.69879 1.07716 1.29628 1.32945 1.26023 0.94804 1.01721 0.92125 0.86205 0.81058 0.80495 0.78737 1.18188 1.19491 1.19809 1.19704 0.98418 0.91355 1.37849 0.89930 1.17761 0.90603 0.92118 0.87595 1.20696 1.04488 0.92837 1.07565 1.20412 0.93723 0.96900 0.94912 1.17441 1.02006 0.88342 1.10964 1.18754 0.91420 0.90066 0.92005 1.26020 1.07273 0.96428 1.16123 1.84442 1.34354 1.04591 1.52999 1.24176 0.93519 0.89894 0.95352 1.41351 1.37404 1.01454 1.57451 1.66594 1.31747 0.97824 1.30053 1.20434 0.97884 0.92011 0.98298 1.20926 0.99901 0.96813 1.01752 0.90529 0.88725 0.88344 0.81442 0.75966 0.75919 0.89041 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.44 10.97 55.54 0.61 -18.83 15 2 C 0.07 1.77 5.12 -17.35 -0.09 1.68 15 3 Si 0.91 17.94 29.60 -169.99 -5.03 12.91 15 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 15 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 15 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 7 C -0.44 -11.48 9.02 -37.96 -0.34 -11.82 15 8 H 0.08 2.04 7.91 -52.48 -0.41 1.62 15 9 C 0.12 3.23 5.57 -106.79 -0.59 2.64 15 10 C -0.24 -5.89 9.73 -39.30 -0.38 -6.27 15 11 C -0.04 -0.97 9.56 -39.63 -0.38 -1.35 15 12 C -0.18 -4.35 5.90 -104.63 -0.62 -4.97 15 13 C 0.20 4.34 6.63 -84.48 -0.56 3.78 15 14 C -0.32 -6.02 10.59 29.65 0.31 -5.71 15 15 S -0.01 -0.11 23.42 -107.50 -2.52 -2.63 15 16 C 0.35 5.51 8.82 -87.99 -0.78 4.73 15 17 N -0.82 -8.84 9.06 30.71 0.28 -8.56 15 18 N -0.54 -10.67 9.92 -10.48 -0.10 -10.77 15 19 C -0.07 -1.59 9.40 -39.63 -0.37 -1.96 15 20 C -0.17 -4.49 8.62 -39.30 -0.34 -4.83 15 21 H 0.28 6.38 8.30 -40.82 -0.34 6.04 15 22 H 0.09 2.20 8.06 -52.49 -0.42 1.78 15 23 H 0.10 2.23 7.65 -52.49 -0.40 1.83 15 24 H 0.17 2.96 6.80 -52.48 -0.36 2.60 15 25 H 0.41 3.03 8.95 -40.82 -0.37 2.67 15 26 H 0.41 3.90 8.95 -40.82 -0.37 3.53 15 27 H 0.09 1.95 6.57 -52.49 -0.34 1.60 15 28 H 0.12 3.11 6.17 -52.48 -0.32 2.79 15 LS Contribution 262.60 15.07 3.96 3.96 Total: -1.00 -28.84 262.60 -9.07 -37.91 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -2.13 Total: 10.11 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -4.14 Total: -24.08 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.78 Total: -38.17 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: -0.11 SS G_CDS: -2.52 Total: -2.63 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.84 -9.07 -37.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261342300.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.534 kcal (2) G-P(sol) polarization free energy of solvation -28.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds