Wall clock time and date at job start Mon Mar 30 2020 05:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48501 * 109.46684 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46981 * 299.99262 * 3 2 1 6 6 H 1.48491 * 109.47341 * 60.00126 * 3 2 1 7 7 C 1.39839 * 119.99674 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99856 * 198.03300 * 7 2 1 9 9 C 1.40929 * 120.00337 * 18.03279 * 7 2 1 10 10 C 1.40989 * 120.09989 * 204.75089 * 9 7 2 11 11 C 1.36126 * 119.89533 * 180.02562 * 10 9 7 12 12 C 1.40141 * 120.10212 * 0.02562 * 11 10 9 13 13 C 1.47630 * 119.90089 * 179.97438 * 12 11 10 14 14 C 1.35208 * 122.46059 * 180.02562 * 13 12 11 15 15 S 1.76192 * 108.24331 * 180.02562 * 14 13 12 16 16 C 1.76057 * 90.15188 * 359.97438 * 15 14 13 17 17 N 1.38322 * 125.20151 * 179.97438 * 16 15 14 18 18 N 1.29653 * 109.59915 * 359.97438 * 16 15 14 19 19 C 1.40144 * 120.20345 * 0.25559 * 12 11 10 20 20 C 1.36126 * 120.10369 * 359.48119 * 19 12 11 21 21 H 0.97000 * 120.00421 * 0.02562 * 1 2 3 22 22 H 1.07997 * 120.05254 * 0.02562 * 10 9 7 23 23 H 1.07994 * 119.95257 * 180.02562 * 11 10 9 24 24 H 1.08004 * 125.88027 * 0.02562 * 14 13 12 25 25 H 0.97003 * 119.99665 * 0.02754 * 17 16 15 26 26 H 0.97000 * 119.99681 * 180.02562 * 17 16 15 27 27 H 1.08000 * 119.94815 * 179.74180 * 19 12 11 28 28 H 1.08003 * 120.05252 * 180.26121 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3463 0.0006 5 1 1.8844 2.3963 -1.2126 6 1 1.8843 2.3964 1.2124 7 6 2.0082 -1.2111 0.0005 8 1 3.0484 -1.2340 0.2901 9 6 1.3555 -2.4018 -0.3767 10 6 1.8268 -3.6454 0.0913 11 6 1.1935 -4.7929 -0.2761 12 6 0.0749 -4.7396 -1.1187 13 6 -0.6082 -5.9869 -1.5149 14 6 -1.6905 -5.9957 -2.3252 15 16 -2.1981 -7.6679 -2.5494 16 6 -0.8823 -8.2112 -1.5135 17 7 -0.6146 -9.5290 -1.1895 18 7 -0.2026 -7.1871 -1.1007 19 6 -0.3936 -3.5062 -1.5912 20 6 0.2301 -2.3530 -1.2247 21 1 -0.4851 0.8400 -0.0004 22 1 2.6890 -3.6875 0.7404 23 1 1.5535 -5.7460 0.0822 24 1 -2.1626 -5.1271 -2.7602 25 1 -1.1741 -10.2384 -1.5424 26 1 0.1327 -9.7436 -0.6095 27 1 -1.2535 -3.4702 -2.2437 28 1 -0.1342 -1.4027 -1.5859 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261342300.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:31 Heat of formation + Delta-G solvation = 38.350557 kcal Electronic energy + Delta-G solvation = -14360.168516 eV Core-core repulsion = 11887.238335 eV Total energy + Delta-G solvation = -2472.930182 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.54334 -39.03085 -36.01670 -35.15457 -32.17712 -31.32138 -29.64798 -27.31173 -24.83673 -22.93680 -22.46223 -20.77593 -19.31001 -19.22377 -17.23754 -17.17565 -16.77363 -16.26748 -15.61496 -15.56809 -14.97684 -14.59448 -14.14245 -13.70157 -13.53301 -13.31687 -12.83584 -12.79498 -12.41446 -12.08340 -11.79237 -11.56787 -11.28727 -11.03499 -10.48255 -10.14856 -9.51888 -9.40757 -8.74260 -8.42728 -6.33777 -0.02835 0.26139 0.87852 0.93644 1.21170 1.39404 1.46221 1.55484 2.18290 2.24465 2.55340 2.84312 3.77442 3.98820 4.35583 4.52264 4.62502 4.75393 4.97053 5.11083 5.19499 5.33507 5.40083 5.68217 5.94827 6.05853 6.10611 6.12931 6.31150 6.51651 6.62129 6.85597 6.97345 7.23763 8.24469 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.059436 B = 0.004806 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.984325 B = 5824.877253 C = 6219.094956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.264 1.264 7 C -0.482 4.482 8 H 0.081 0.919 9 C 0.092 3.908 10 C -0.251 4.251 11 C -0.049 4.049 12 C -0.184 4.184 13 C 0.174 3.826 14 C -0.328 4.328 15 S 0.070 5.930 16 C 0.343 3.657 17 N -0.797 5.797 18 N -0.577 5.577 19 C -0.071 4.071 20 C -0.193 4.193 21 H 0.293 0.707 22 H 0.101 0.899 23 H 0.108 0.892 24 H 0.174 0.826 25 H 0.429 0.571 26 H 0.418 0.582 27 H 0.113 0.887 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 -11.257 -3.821 12.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.183 4.183 3 Si 0.807 3.193 4 H -0.180 1.180 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.510 4.510 8 H 0.099 0.901 9 C 0.089 3.911 10 C -0.270 4.270 11 C -0.068 4.068 12 C -0.188 4.188 13 C 0.047 3.953 14 C -0.468 4.468 15 S 0.315 5.685 16 C -0.033 4.033 17 N -0.352 5.352 18 N -0.304 5.304 19 C -0.091 4.091 20 C -0.213 4.213 21 H 0.104 0.896 22 H 0.119 0.881 23 H 0.126 0.874 24 H 0.192 0.808 25 H 0.263 0.737 26 H 0.251 0.749 27 H 0.131 0.869 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.110 -11.702 -4.033 13.042 hybrid contribution 0.735 1.214 0.493 1.502 sum -3.376 -10.488 -3.540 11.572 Atomic orbital electron populations 1.69912 1.09134 1.31078 1.33445 1.26874 0.95548 1.04822 0.91007 0.85080 0.79407 0.75660 0.79126 1.18046 1.18617 1.18871 1.19916 0.98681 0.92449 1.39972 0.90051 1.18083 0.91469 0.93010 0.88501 1.20865 1.05073 0.93019 1.08079 1.20561 0.94075 0.96897 0.95256 1.17772 1.01550 0.89729 1.09716 1.18586 0.92724 0.90017 0.93941 1.26345 1.06322 0.99606 1.14504 1.84137 1.32399 1.00579 1.51420 1.24493 0.93327 0.90794 0.94707 1.41415 1.37478 0.99961 1.56336 1.66518 1.33670 0.98042 1.32158 1.20653 0.98343 0.91647 0.98422 1.20924 1.00634 0.97078 1.02645 0.89630 0.88130 0.87391 0.80848 0.73711 0.74894 0.86864 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.62 10.97 21.81 0.24 -41.38 15 2 C 0.03 1.70 5.12 85.22 0.44 2.14 15 3 Si 0.99 37.17 29.60 68.60 2.03 39.20 15 4 H -0.26 -9.50 7.11 99.48 0.71 -8.79 15 5 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 6 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 7 C -0.48 -25.87 9.02 23.32 0.21 -25.66 15 8 H 0.08 4.20 7.91 -2.91 -0.02 4.17 15 9 C 0.09 5.09 5.57 -21.27 -0.12 4.97 15 10 C -0.25 -13.02 9.73 22.45 0.22 -12.80 15 11 C -0.05 -2.40 9.56 22.24 0.21 -2.19 15 12 C -0.18 -8.83 5.90 -19.87 -0.12 -8.94 15 13 C 0.17 7.28 6.63 40.70 0.27 7.55 15 14 C -0.33 -11.72 10.59 67.12 0.71 -11.01 15 15 S 0.07 1.86 23.42 -56.49 -1.32 0.54 15 16 C 0.34 9.90 8.82 179.43 1.58 11.48 15 17 N -0.80 -14.23 9.06 -56.75 -0.51 -14.75 15 18 N -0.58 -22.06 9.92 -187.06 -1.86 -23.91 15 19 C -0.07 -3.47 9.40 22.24 0.21 -3.26 15 20 C -0.19 -10.35 8.62 22.45 0.19 -10.16 15 21 H 0.29 13.38 8.30 -92.71 -0.77 12.61 15 22 H 0.10 4.90 8.06 -2.91 -0.02 4.87 15 23 H 0.11 4.98 7.65 -2.91 -0.02 4.96 15 24 H 0.17 5.82 6.80 -2.91 -0.02 5.80 15 25 H 0.43 4.48 8.95 -92.71 -0.83 3.65 15 26 H 0.42 6.59 8.95 -92.71 -0.83 5.76 15 27 H 0.11 4.84 6.57 -2.91 -0.02 4.82 15 28 H 0.11 5.92 6.17 -2.91 -0.02 5.90 15 Total: -1.00 -63.89 262.60 1.95 -61.94 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: -0.43 Total: 26.25 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 3.81 Total: -47.88 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -2.13 Total: -80.05 kcal Atomic # 14 Polarization: 37.17 SS G_CDS: 2.03 Total: 39.20 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -63.89 1.95 -61.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261342300.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.286 kcal (2) G-P(sol) polarization free energy of solvation -63.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds