Wall clock time and date at job start Mon Mar 30 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86791 * 120.00035 * 2 1 4 4 H 1.48509 * 109.47190 * 239.99996 * 3 2 1 5 5 H 1.48507 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47545 * 120.00237 * 3 2 1 7 7 C 1.39924 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00148 * 197.74307 * 7 2 1 9 9 C 1.41429 * 119.99926 * 17.74357 * 7 2 1 10 10 C 1.40811 * 120.17942 * 204.36753 * 9 7 2 11 11 C 1.37696 * 119.99737 * 180.02562 * 10 9 7 12 12 C 1.38418 * 120.38140 * 359.97438 * 11 10 9 13 13 C 1.39754 * 120.37531 * 359.97438 * 12 11 10 14 14 C 1.48316 * 120.00666 * 180.02562 * 13 12 11 15 15 C 1.34383 * 122.35445 * 4.73551 * 14 13 12 16 16 S 1.76193 * 108.30995 * 179.90950 * 15 14 13 17 17 C 1.76088 * 90.09535 * 0.29156 * 16 15 14 18 18 N 1.38540 * 125.27553 * 179.80600 * 17 16 15 19 19 N 1.29703 * 109.44929 * 359.83063 * 17 16 15 20 20 C 1.38827 * 119.98561 * 0.29372 * 13 12 11 21 21 H 0.96995 * 120.00258 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.00031 * 359.97438 * 10 9 7 23 23 H 1.07997 * 119.80980 * 179.97438 * 11 10 9 24 24 H 1.08003 * 119.81194 * 180.02562 * 12 11 10 25 25 H 1.08010 * 125.84420 * 359.97438 * 15 14 13 26 26 H 0.97004 * 120.00134 * 180.02562 * 18 17 16 27 27 H 0.97002 * 120.00095 * 0.02779 * 18 17 16 28 28 H 1.07998 * 120.18522 * 179.70146 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2126 5 1 1.2774 2.7465 -0.0006 6 1 3.0962 1.6964 1.2124 7 6 2.0080 -1.2118 -0.0005 8 1 3.0494 -1.2342 0.2845 9 6 1.3513 -2.4073 -0.3743 10 6 1.8275 -3.6501 0.0856 11 6 1.1855 -4.8117 -0.2811 12 6 0.0712 -4.7669 -1.1010 13 6 -0.4155 -3.5420 -1.5657 14 6 -1.6105 -3.5035 -2.4434 15 6 -2.3165 -4.6062 -2.7458 16 16 -3.6475 -4.1390 -3.8016 17 6 -3.1102 -2.4632 -3.7423 18 7 -3.7187 -1.4042 -4.3962 19 7 -2.0560 -2.3739 -2.9919 20 6 0.2231 -2.3618 -1.2101 21 1 -0.4850 0.8400 0.0004 22 1 2.6966 -3.6922 0.7252 23 1 1.5535 -5.7633 0.0730 24 1 -0.4255 -5.6837 -1.3826 25 1 -2.1050 -5.6073 -2.3999 26 1 -3.3565 -0.5084 -4.3103 27 1 -4.5071 -1.5585 -4.9399 28 1 -0.1474 -1.4138 -1.5713 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261353575.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:06 Heat of formation + Delta-G solvation = 59.102277 kcal Electronic energy + Delta-G solvation = -14647.226467 eV Core-core repulsion = 12175.196148 eV Total energy + Delta-G solvation = -2472.030320 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.12062 -37.14645 -34.49209 -33.51517 -30.43630 -29.36593 -27.92350 -25.13040 -23.76133 -21.19628 -20.74193 -19.33315 -17.96047 -16.87081 -16.05818 -15.56910 -15.26061 -14.68848 -14.22068 -13.91346 -13.11302 -13.00908 -12.47835 -12.20378 -11.67867 -11.30089 -11.16151 -11.01704 -10.73264 -10.52955 -10.31477 -9.58877 -9.52174 -9.15392 -9.04592 -8.85383 -7.93183 -7.37616 -6.91199 -6.67129 -4.30528 1.36026 1.46873 2.21169 2.64064 2.93380 3.09810 3.12632 3.25072 3.65173 3.88844 3.97619 4.73410 5.26387 5.75572 5.84596 6.10589 6.27082 6.44399 6.57393 6.90217 7.11122 7.12133 7.21641 7.35154 7.45758 7.60751 7.88052 8.02781 8.11277 8.31876 8.50270 8.67238 8.92862 8.98558 10.24380 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.007561 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.440931 B = 3702.515796 C = 4834.074671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.464 4.464 8 H 0.078 0.922 9 C 0.100 3.900 10 C -0.219 4.219 11 C -0.098 4.098 12 C -0.219 4.219 13 C -0.033 4.033 14 C 0.182 3.818 15 C -0.289 4.289 16 S -0.003 6.003 17 C 0.347 3.653 18 N -0.822 5.822 19 N -0.519 5.519 20 C -0.113 4.113 21 H 0.281 0.719 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.173 0.827 26 H 0.412 0.588 27 H 0.410 0.590 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.921 -2.225 -6.978 10.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.494 4.494 8 H 0.096 0.904 9 C 0.098 3.902 10 C -0.239 4.239 11 C -0.116 4.116 12 C -0.239 4.239 13 C -0.036 4.036 14 C 0.055 3.945 15 C -0.428 4.428 16 S 0.241 5.759 17 C -0.028 4.028 18 N -0.375 5.375 19 N -0.243 5.243 20 C -0.134 4.134 21 H 0.092 0.908 22 H 0.111 0.889 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.190 0.810 26 H 0.244 0.756 27 H 0.240 0.760 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.696 -2.112 -7.354 10.852 hybrid contribution 0.749 0.970 0.394 1.287 sum -6.947 -1.142 -6.960 9.900 Atomic orbital electron populations 1.69823 1.07458 1.29322 1.34548 1.25901 0.94711 1.01235 0.92409 0.86392 0.80145 0.80400 0.79904 1.18852 1.20388 1.19070 1.19516 0.98067 0.91188 1.40602 0.90413 1.17604 0.91341 0.92235 0.89040 1.21066 1.03581 0.92879 1.06361 1.20399 0.96072 0.96623 0.98540 1.20292 1.01198 0.94836 1.07616 1.17893 0.92850 0.94695 0.98166 1.18879 0.95559 0.85107 0.94911 1.26085 1.01420 1.03813 1.11459 1.84501 1.34039 1.04285 1.53031 1.24295 0.92637 0.91068 0.94825 1.41408 1.33629 1.07463 1.55026 1.66660 1.12763 1.29830 1.15022 1.21627 0.97073 0.96714 0.97948 0.90806 0.88902 0.89065 0.89104 0.81002 0.75630 0.75970 0.84812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.97 10.96 55.55 0.61 -20.36 15 2 C 0.08 1.94 5.14 -17.34 -0.09 1.86 15 3 Si 0.91 19.04 29.59 -169.99 -5.03 14.01 15 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 15 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 6 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 7 C -0.46 -12.55 9.05 -37.74 -0.34 -12.90 15 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 15 9 C 0.10 2.74 5.57 -106.87 -0.60 2.15 15 10 C -0.22 -5.46 9.79 -38.81 -0.38 -5.84 15 11 C -0.10 -2.23 10.01 -39.71 -0.40 -2.63 15 12 C -0.22 -5.00 9.48 -38.95 -0.37 -5.37 15 13 C -0.03 -0.81 5.87 -104.97 -0.62 -1.43 15 14 C 0.18 4.03 6.61 -84.47 -0.56 3.47 15 15 C -0.29 -5.34 10.56 29.37 0.31 -5.03 15 16 S 0.00 -0.04 23.42 -107.50 -2.52 -2.56 15 17 C 0.35 5.85 8.84 -87.74 -0.78 5.07 15 18 N -0.82 -9.80 9.07 30.77 0.28 -9.53 15 19 N -0.52 -11.11 9.95 -10.40 -0.10 -11.21 15 20 C -0.11 -3.09 8.27 -38.52 -0.32 -3.41 15 21 H 0.28 6.87 8.30 -40.82 -0.34 6.53 15 22 H 0.09 2.16 8.06 -52.49 -0.42 1.73 15 23 H 0.09 1.77 8.06 -52.49 -0.42 1.35 15 24 H 0.09 1.80 6.59 -52.48 -0.35 1.46 15 25 H 0.17 2.86 6.82 -52.48 -0.36 2.50 15 26 H 0.41 4.64 8.95 -40.82 -0.37 4.28 15 27 H 0.41 3.38 8.95 -40.82 -0.37 3.02 15 28 H 0.13 3.83 5.77 -52.49 -0.30 3.52 15 LS Contribution 262.89 15.07 3.96 3.96 Total: -1.00 -30.17 262.89 -9.07 -39.23 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -2.13 Total: 10.51 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -4.13 Total: -24.05 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.78 Total: -41.10 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.52 Total: -2.56 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.17 -9.07 -39.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261353575.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.334 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds