Wall clock time and date at job start Mon Mar 30 2020 05:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86791 * 120.00035 * 2 1 4 4 H 1.48509 * 109.47190 * 239.99996 * 3 2 1 5 5 H 1.48507 * 109.47238 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47545 * 120.00237 * 3 2 1 7 7 C 1.39924 * 119.99932 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00148 * 197.74307 * 7 2 1 9 9 C 1.41429 * 119.99926 * 17.74357 * 7 2 1 10 10 C 1.40811 * 120.17942 * 204.36753 * 9 7 2 11 11 C 1.37696 * 119.99737 * 180.02562 * 10 9 7 12 12 C 1.38418 * 120.38140 * 359.97438 * 11 10 9 13 13 C 1.39754 * 120.37531 * 359.97438 * 12 11 10 14 14 C 1.48316 * 120.00666 * 180.02562 * 13 12 11 15 15 C 1.34383 * 122.35445 * 4.73551 * 14 13 12 16 16 S 1.76193 * 108.30995 * 179.90950 * 15 14 13 17 17 C 1.76088 * 90.09535 * 0.29156 * 16 15 14 18 18 N 1.38540 * 125.27553 * 179.80600 * 17 16 15 19 19 N 1.29703 * 109.44929 * 359.83063 * 17 16 15 20 20 C 1.38827 * 119.98561 * 0.29372 * 13 12 11 21 21 H 0.96995 * 120.00258 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.00031 * 359.97438 * 10 9 7 23 23 H 1.07997 * 119.80980 * 179.97438 * 11 10 9 24 24 H 1.08003 * 119.81194 * 180.02562 * 12 11 10 25 25 H 1.08010 * 125.84420 * 359.97438 * 15 14 13 26 26 H 0.97004 * 120.00134 * 180.02562 * 18 17 16 27 27 H 0.97002 * 120.00095 * 0.02779 * 18 17 16 28 28 H 1.07998 * 120.18522 * 179.70146 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0962 1.6963 -1.2126 5 1 1.2774 2.7465 -0.0006 6 1 3.0962 1.6964 1.2124 7 6 2.0080 -1.2118 -0.0005 8 1 3.0494 -1.2342 0.2845 9 6 1.3513 -2.4073 -0.3743 10 6 1.8275 -3.6501 0.0856 11 6 1.1855 -4.8117 -0.2811 12 6 0.0712 -4.7669 -1.1010 13 6 -0.4155 -3.5420 -1.5657 14 6 -1.6105 -3.5035 -2.4434 15 6 -2.3165 -4.6062 -2.7458 16 16 -3.6475 -4.1390 -3.8016 17 6 -3.1102 -2.4632 -3.7423 18 7 -3.7187 -1.4042 -4.3962 19 7 -2.0560 -2.3739 -2.9919 20 6 0.2231 -2.3618 -1.2101 21 1 -0.4850 0.8400 0.0004 22 1 2.6966 -3.6922 0.7252 23 1 1.5535 -5.7633 0.0730 24 1 -0.4255 -5.6837 -1.3826 25 1 -2.1050 -5.6073 -2.3999 26 1 -3.3565 -0.5084 -4.3103 27 1 -4.5071 -1.5585 -4.9399 28 1 -0.1474 -1.4138 -1.5713 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261353575.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:06 Heat of formation + Delta-G solvation = 40.089283 kcal Electronic energy + Delta-G solvation = -14648.050932 eV Core-core repulsion = 12175.196148 eV Total energy + Delta-G solvation = -2472.854785 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.61819 -38.91276 -35.88415 -35.25280 -32.15678 -31.22475 -29.50113 -27.04014 -25.21741 -22.92890 -22.47533 -20.83234 -19.47266 -18.64827 -17.30046 -17.09952 -16.80858 -16.41878 -15.64405 -15.63162 -14.95620 -14.63163 -14.13153 -13.82042 -13.49467 -13.01371 -12.81450 -12.58973 -12.52769 -12.15791 -11.84068 -11.42158 -11.36044 -11.00183 -10.45664 -10.20394 -9.48882 -9.29741 -8.63368 -8.38359 -6.31654 -0.08396 0.19435 0.81958 0.93139 1.11941 1.36837 1.48585 1.53228 2.20931 2.26117 2.53277 2.85648 3.81563 3.88351 4.36174 4.55114 4.65971 4.74726 4.86797 5.16295 5.19399 5.37310 5.46779 5.69223 5.99105 6.05352 6.09245 6.20288 6.38023 6.46862 6.70067 6.96050 7.04781 7.23833 8.36576 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.022937 B = 0.007561 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.440931 B = 3702.515796 C = 4834.074671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.034 3.966 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.504 4.504 8 H 0.077 0.923 9 C 0.068 3.932 10 C -0.237 4.237 11 C -0.096 4.096 12 C -0.216 4.216 13 C -0.039 4.039 14 C 0.142 3.858 15 C -0.288 4.288 16 S 0.088 5.912 17 C 0.335 3.665 18 N -0.800 5.800 19 N -0.573 5.573 20 C -0.149 4.149 21 H 0.285 0.715 22 H 0.101 0.899 23 H 0.131 0.869 24 H 0.126 0.874 25 H 0.191 0.809 26 H 0.415 0.585 27 H 0.429 0.571 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 -3.274 -8.037 11.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.534 4.534 8 H 0.095 0.905 9 C 0.066 3.934 10 C -0.257 4.257 11 C -0.114 4.114 12 C -0.236 4.236 13 C -0.042 4.042 14 C 0.014 3.986 15 C -0.428 4.428 16 S 0.333 5.667 17 C -0.041 4.041 18 N -0.355 5.355 19 N -0.299 5.299 20 C -0.170 4.170 21 H 0.096 0.904 22 H 0.119 0.881 23 H 0.149 0.851 24 H 0.144 0.856 25 H 0.208 0.792 26 H 0.248 0.752 27 H 0.263 0.737 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.019 -3.166 -8.445 12.755 hybrid contribution 0.959 1.123 0.604 1.595 sum -8.060 -2.043 -7.842 11.430 Atomic orbital electron populations 1.69917 1.09027 1.30342 1.35470 1.26772 0.95438 1.04557 0.91354 0.85276 0.78772 0.75718 0.80054 1.18650 1.19263 1.18080 1.19793 0.98347 0.92515 1.42731 0.90480 1.17993 0.92114 0.93502 0.89758 1.21305 1.04309 0.93109 1.06969 1.20828 0.95496 0.97452 0.97578 1.20736 1.00921 0.95495 1.06485 1.18311 0.93541 0.94522 0.97824 1.18736 0.96225 0.86784 0.96812 1.26454 1.01905 1.03710 1.10758 1.84125 1.30824 1.01215 1.50524 1.24639 0.92040 0.93299 0.94083 1.41467 1.33539 1.06731 1.53778 1.66574 1.15280 1.30761 1.17333 1.21482 0.98552 0.96951 0.99998 0.90440 0.88090 0.85145 0.85581 0.79197 0.75208 0.73664 0.87291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.98 10.96 21.82 0.24 -45.74 15 2 C 0.03 1.79 5.14 85.25 0.44 2.23 15 3 Si 0.98 40.20 29.59 68.60 2.03 42.23 15 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 15 6 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 7 C -0.50 -28.66 9.05 23.46 0.21 -28.45 15 8 H 0.08 4.18 7.91 -2.91 -0.02 4.15 15 9 C 0.07 3.92 5.57 -21.32 -0.12 3.81 15 10 C -0.24 -12.06 9.79 22.77 0.22 -11.84 15 11 C -0.10 -4.24 10.01 22.18 0.22 -4.02 15 12 C -0.22 -9.62 9.48 22.68 0.21 -9.41 15 13 C -0.04 -1.97 5.87 -20.09 -0.12 -2.08 15 14 C 0.14 6.25 6.61 40.73 0.27 6.52 15 15 C -0.29 -10.01 10.56 66.94 0.71 -9.31 15 16 S 0.09 2.35 23.42 -56.49 -1.32 1.02 15 17 C 0.34 10.77 8.84 179.34 1.59 12.36 15 18 N -0.80 -17.55 9.07 -56.57 -0.51 -18.06 15 19 N -0.57 -24.76 9.95 -186.81 -1.86 -26.62 15 20 C -0.15 -8.55 8.27 22.96 0.19 -8.36 15 21 H 0.29 14.56 8.30 -92.71 -0.77 13.80 15 22 H 0.10 4.79 8.06 -2.91 -0.02 4.77 15 23 H 0.13 4.68 8.06 -2.91 -0.02 4.66 15 24 H 0.13 4.61 6.59 -2.91 -0.02 4.59 15 25 H 0.19 5.66 6.82 -2.91 -0.02 5.64 15 26 H 0.42 8.89 8.95 -92.71 -0.83 8.06 15 27 H 0.43 5.80 8.95 -92.71 -0.83 4.97 15 28 H 0.11 6.67 5.77 -2.91 -0.02 6.66 15 Total: -1.00 -69.22 262.89 1.97 -67.25 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -0.43 Total: 28.47 kcal Atomic # 6 Polarization: -52.38 SS G_CDS: 3.83 Total: -48.56 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -2.13 Total: -90.42 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.32 Total: 1.02 kcal Total: -69.22 1.97 -67.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261353575.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.343 kcal (2) G-P(sol) polarization free energy of solvation -69.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds