Wall clock time and date at job start Mon Mar 30 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86807 * 120.00084 * 2 1 4 4 H 1.48496 * 109.47121 * 269.97749 * 3 2 1 5 5 H 1.48504 * 109.47052 * 29.97816 * 3 2 1 6 6 H 1.48505 * 109.47020 * 149.97782 * 3 2 1 7 7 C 1.39913 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99853 * 346.80715 * 7 2 1 9 9 C 1.40774 * 119.99935 * 166.80195 * 7 2 1 10 10 C 1.40779 * 120.34538 * 325.98965 * 9 7 2 11 11 C 1.36339 * 119.99634 * 179.97438 * 10 9 7 12 12 C 1.39053 * 120.73516 * 0.02562 * 11 10 9 13 13 C 1.37861 * 120.70772 * 359.97438 * 12 11 10 14 14 C 1.39443 * 119.96727 * 0.02562 * 13 12 11 15 15 C 1.47504 * 120.35996 * 179.97438 * 14 13 12 16 16 C 1.35272 * 122.46380 * 353.74790 * 15 14 13 17 17 S 1.76198 * 108.23727 * 179.91321 * 16 15 14 18 18 C 1.76060 * 90.15760 * 0.29498 * 17 16 15 19 19 N 1.38306 * 125.19098 * 179.83160 * 18 17 16 20 20 N 1.29644 * 109.61126 * 359.82718 * 18 17 16 21 21 H 0.97002 * 119.99859 * 0.02562 * 1 2 3 22 22 H 1.07994 * 119.99969 * 359.97438 * 10 9 7 23 23 H 1.08006 * 119.62935 * 180.27826 * 11 10 9 24 24 H 1.08000 * 119.64456 * 179.97438 * 12 11 10 25 25 H 1.08003 * 120.01657 * 180.02562 * 13 12 11 26 26 H 1.07996 * 125.88447 * 359.97438 * 16 15 14 27 27 H 0.97005 * 119.99945 * 179.97438 * 19 18 17 28 28 H 0.97001 * 120.00222 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4907 2.0462 -1.4000 5 1 1.4400 2.6529 0.6996 6 1 3.5401 1.4403 0.7005 7 6 2.0083 -1.2117 0.0005 8 1 1.4897 -2.1345 0.2144 9 6 3.3881 -1.2278 -0.2778 10 6 3.9394 -0.3135 -1.1954 11 6 5.2768 -0.3351 -1.4593 12 6 6.1103 -1.2540 -0.8312 13 6 5.6021 -2.1628 0.0724 14 6 4.2385 -2.1667 0.3642 15 6 3.6854 -3.1355 1.3291 16 6 4.4301 -4.1261 1.8714 17 16 3.4045 -5.0515 2.9651 18 6 2.0411 -4.0068 2.5783 19 7 0.7675 -4.1314 3.1030 20 7 2.4134 -3.1030 1.7267 21 1 -0.4850 0.8401 -0.0004 22 1 3.3028 0.4050 -1.6903 23 1 5.6941 0.3720 -2.1609 24 1 7.1671 -1.2558 -1.0537 25 1 6.2597 -2.8713 0.5540 26 1 5.4739 -4.3163 1.6696 27 1 0.0705 -3.5115 2.8366 28 1 0.5712 -4.8385 3.7373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261358685.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:33 Heat of formation + Delta-G solvation = 70.365968 kcal Electronic energy + Delta-G solvation = -15057.621003 eV Core-core repulsion = 12586.079114 eV Total energy + Delta-G solvation = -2471.541889 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.97928 -37.28264 -34.14930 -33.60164 -30.51179 -30.37115 -27.61497 -25.08920 -23.72921 -21.17318 -20.76677 -19.19526 -17.76033 -17.27680 -15.74924 -15.61109 -15.39142 -14.55280 -13.99348 -13.84058 -13.37162 -13.05125 -12.65102 -12.15389 -12.04030 -11.56259 -11.04563 -10.85375 -10.75695 -10.45784 -10.15054 -9.78901 -9.69208 -9.13292 -8.66579 -8.45634 -7.88520 -7.57187 -6.91554 -6.80235 -4.34088 1.53754 1.76268 2.52418 2.55311 2.69565 3.13082 3.21174 3.34232 3.93645 4.00629 4.03614 4.63008 5.48405 5.56355 5.91811 6.09366 6.14764 6.30194 6.42348 6.63257 6.89955 6.92853 7.20074 7.32453 7.43146 7.55898 7.74483 7.76752 7.93893 8.14768 8.56572 8.70086 8.84199 8.94472 10.09786 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.010505 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.440096 B = 2664.847466 C = 3814.624668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.080 3.920 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.246 1.246 7 C -0.393 4.393 8 H 0.124 0.876 9 C 0.106 3.894 10 C -0.232 4.232 11 C -0.070 4.070 12 C -0.253 4.253 13 C -0.047 4.047 14 C -0.156 4.156 15 C 0.207 3.793 16 C -0.325 4.325 17 S -0.031 6.031 18 C 0.348 3.652 19 N -0.823 5.823 20 N -0.491 5.491 21 H 0.284 0.716 22 H 0.103 0.897 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.164 0.836 27 H 0.414 0.586 28 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 -4.900 4.517 7.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.139 4.139 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.220 1.220 6 H -0.170 1.170 7 C -0.420 4.420 8 H 0.141 0.859 9 C 0.101 3.899 10 C -0.251 4.251 11 C -0.088 4.088 12 C -0.272 4.272 13 C -0.066 4.066 14 C -0.161 4.161 15 C 0.081 3.919 16 C -0.464 4.464 17 S 0.212 5.788 18 C -0.028 4.028 19 N -0.376 5.376 20 N -0.214 5.214 21 H 0.094 0.906 22 H 0.121 0.879 23 H 0.111 0.889 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.181 0.819 27 H 0.246 0.754 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 2.196 -5.291 4.998 7.603 hybrid contribution 0.276 1.288 -0.405 1.378 sum 2.472 -4.003 4.593 6.575 Atomic orbital electron populations 1.69678 1.07994 1.30044 1.34968 1.26259 0.94800 1.01489 0.91322 0.86413 0.81019 0.79953 0.79167 1.19549 1.21972 1.16954 1.19959 0.91288 0.96607 1.34195 0.85876 1.17731 0.93245 0.89815 0.89071 1.20898 0.95242 1.05034 1.03955 1.20442 0.93853 0.96914 0.97633 1.20220 0.97948 1.02770 1.06277 1.20663 0.93542 0.96531 0.95888 1.17964 0.92185 1.03090 1.02826 1.18615 0.85900 0.93027 0.94369 1.25969 1.04021 1.05073 1.11309 1.84368 1.06228 1.38257 1.49914 1.24637 0.90932 0.93093 0.94130 1.41391 1.07169 1.38130 1.50867 1.67148 1.16346 1.22798 1.15080 0.90579 0.87883 0.88886 0.88668 0.88396 0.81857 0.75391 0.76323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.09 13.93 55.55 0.77 -20.31 15 2 C 0.08 2.10 5.45 -17.33 -0.09 2.00 15 3 Si 0.91 21.03 24.52 -169.99 -4.17 16.86 15 4 H -0.27 -6.00 6.56 56.52 0.37 -5.63 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 15 6 H -0.25 -5.95 6.95 56.52 0.39 -5.55 15 7 C -0.39 -10.65 8.20 -38.00 -0.31 -10.96 15 8 H 0.12 3.54 5.96 -52.49 -0.31 3.23 15 9 C 0.11 2.75 5.06 -106.53 -0.54 2.21 15 10 C -0.23 -5.63 7.09 -39.31 -0.28 -5.91 15 11 C -0.07 -1.52 9.96 -39.96 -0.40 -1.91 15 12 C -0.25 -5.26 10.02 -39.42 -0.40 -5.66 15 13 C -0.05 -1.01 9.47 -39.27 -0.37 -1.38 15 14 C -0.16 -3.79 5.93 -104.23 -0.62 -4.40 15 15 C 0.21 4.74 6.56 -84.51 -0.55 4.19 15 16 C -0.32 -6.31 10.59 29.68 0.31 -6.00 15 17 S -0.03 -0.52 23.42 -107.50 -2.52 -3.04 15 18 C 0.35 6.50 8.82 -88.01 -0.78 5.72 15 19 N -0.82 -11.74 9.06 30.71 0.28 -11.46 15 20 N -0.49 -11.24 7.09 -10.50 -0.07 -11.31 15 21 H 0.28 6.79 8.30 -40.82 -0.34 6.46 15 22 H 0.10 2.47 4.79 -52.49 -0.25 2.22 15 23 H 0.09 1.74 8.06 -52.48 -0.42 1.32 15 24 H 0.10 1.71 8.06 -52.49 -0.42 1.28 15 25 H 0.10 1.82 6.65 -52.48 -0.35 1.47 15 26 H 0.16 2.82 6.88 -52.49 -0.36 2.46 15 27 H 0.41 5.96 8.95 -40.82 -0.37 5.60 15 28 H 0.41 4.22 8.95 -40.82 -0.37 3.86 15 LS Contribution 252.39 15.07 3.80 3.80 Total: -1.00 -29.05 252.39 -7.95 -37.00 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -2.03 Total: 10.57 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -4.02 Total: -22.11 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.98 Total: -43.09 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.17 Total: 16.86 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -2.52 Total: -3.04 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.05 -7.95 -37.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261358685.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.368 kcal (2) G-P(sol) polarization free energy of solvation -29.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds