Wall clock time and date at job start Mon Mar 30 2020 05:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86807 * 120.00084 * 2 1 4 4 H 1.48496 * 109.47121 * 269.97749 * 3 2 1 5 5 H 1.48504 * 109.47052 * 29.97816 * 3 2 1 6 6 H 1.48505 * 109.47020 * 149.97782 * 3 2 1 7 7 C 1.39913 * 120.00129 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99853 * 346.80715 * 7 2 1 9 9 C 1.40774 * 119.99935 * 166.80195 * 7 2 1 10 10 C 1.40779 * 120.34538 * 325.98965 * 9 7 2 11 11 C 1.36339 * 119.99634 * 179.97438 * 10 9 7 12 12 C 1.39053 * 120.73516 * 0.02562 * 11 10 9 13 13 C 1.37861 * 120.70772 * 359.97438 * 12 11 10 14 14 C 1.39443 * 119.96727 * 0.02562 * 13 12 11 15 15 C 1.47504 * 120.35996 * 179.97438 * 14 13 12 16 16 C 1.35272 * 122.46380 * 353.74790 * 15 14 13 17 17 S 1.76198 * 108.23727 * 179.91321 * 16 15 14 18 18 C 1.76060 * 90.15760 * 0.29498 * 17 16 15 19 19 N 1.38306 * 125.19098 * 179.83160 * 18 17 16 20 20 N 1.29644 * 109.61126 * 359.82718 * 18 17 16 21 21 H 0.97002 * 119.99859 * 0.02562 * 1 2 3 22 22 H 1.07994 * 119.99969 * 359.97438 * 10 9 7 23 23 H 1.08006 * 119.62935 * 180.27826 * 11 10 9 24 24 H 1.08000 * 119.64456 * 179.97438 * 12 11 10 25 25 H 1.08003 * 120.01657 * 180.02562 * 13 12 11 26 26 H 1.07996 * 125.88447 * 359.97438 * 16 15 14 27 27 H 0.97005 * 119.99945 * 179.97438 * 19 18 17 28 28 H 0.97001 * 120.00222 * 359.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4907 2.0462 -1.4000 5 1 1.4400 2.6529 0.6996 6 1 3.5401 1.4403 0.7005 7 6 2.0083 -1.2117 0.0005 8 1 1.4897 -2.1345 0.2144 9 6 3.3881 -1.2278 -0.2778 10 6 3.9394 -0.3135 -1.1954 11 6 5.2768 -0.3351 -1.4593 12 6 6.1103 -1.2540 -0.8312 13 6 5.6021 -2.1628 0.0724 14 6 4.2385 -2.1667 0.3642 15 6 3.6854 -3.1355 1.3291 16 6 4.4301 -4.1261 1.8714 17 16 3.4045 -5.0515 2.9651 18 6 2.0411 -4.0068 2.5783 19 7 0.7675 -4.1314 3.1030 20 7 2.4134 -3.1030 1.7267 21 1 -0.4850 0.8401 -0.0004 22 1 3.3028 0.4050 -1.6903 23 1 5.6941 0.3720 -2.1609 24 1 7.1671 -1.2558 -1.0537 25 1 6.2597 -2.8713 0.5540 26 1 5.4739 -4.3163 1.6696 27 1 0.0705 -3.5115 2.8366 28 1 0.5712 -4.8385 3.7373 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261358685.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:33 Heat of formation + Delta-G solvation = 51.744644 kcal Electronic energy + Delta-G solvation = -15058.428485 eV Core-core repulsion = 12586.079114 eV Total energy + Delta-G solvation = -2472.349370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.052 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.58377 -38.95058 -35.53856 -35.41206 -32.29987 -32.02689 -29.21564 -26.89405 -25.27935 -22.83666 -22.47841 -20.71271 -19.42631 -18.94306 -17.36113 -17.08388 -16.84476 -16.25099 -15.63596 -15.47207 -15.09772 -14.67342 -14.43751 -13.84260 -13.69165 -13.27130 -12.65311 -12.64028 -12.45115 -12.12806 -11.70143 -11.55656 -11.47032 -10.93910 -10.13473 -10.00209 -9.48274 -9.33553 -8.74789 -8.35245 -6.25405 -0.01595 0.34434 0.85637 0.92937 1.02865 1.26768 1.39328 1.48403 2.15464 2.40007 2.69235 2.79757 3.67466 4.05895 4.31024 4.43283 4.64368 4.70983 4.83387 4.91301 5.17387 5.30442 5.42335 5.62147 5.89300 5.99077 6.10379 6.15874 6.39275 6.53885 6.65129 6.88806 6.97485 7.43900 8.28321 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.021248 B = 0.010505 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.440096 B = 2664.847466 C = 3814.624668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.045 3.955 3 Si 0.956 3.044 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.426 4.426 8 H 0.094 0.906 9 C 0.082 3.918 10 C -0.253 4.253 11 C -0.076 4.076 12 C -0.235 4.235 13 C -0.057 4.057 14 C -0.168 4.168 15 C 0.167 3.833 16 C -0.319 4.319 17 S 0.052 5.948 18 C 0.329 3.671 19 N -0.805 5.805 20 N -0.543 5.543 21 H 0.288 0.712 22 H 0.098 0.902 23 H 0.127 0.873 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.188 0.812 27 H 0.412 0.588 28 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -5.923 5.160 9.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.168 4.168 3 Si 0.781 3.219 4 H -0.183 1.183 5 H -0.210 1.210 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.273 4.273 11 C -0.094 4.094 12 C -0.254 4.254 13 C -0.076 4.076 14 C -0.172 4.172 15 C 0.040 3.960 16 C -0.459 4.459 17 S 0.297 5.703 18 C -0.047 4.047 19 N -0.359 5.359 20 N -0.268 5.268 21 H 0.099 0.901 22 H 0.115 0.885 23 H 0.144 0.856 24 H 0.153 0.847 25 H 0.149 0.851 26 H 0.205 0.795 27 H 0.244 0.756 28 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 4.893 -6.345 5.666 9.814 hybrid contribution -0.319 1.321 -0.503 1.449 sum 4.574 -5.024 5.163 8.534 Atomic orbital electron populations 1.69708 1.08731 1.30683 1.38250 1.26746 0.95352 1.03431 0.91305 0.85674 0.79120 0.77595 0.79490 1.18254 1.21031 1.18786 1.19804 0.92285 0.96118 1.37330 0.88791 1.18010 0.93236 0.91150 0.89765 1.20999 0.96655 1.05266 1.04342 1.20861 0.92932 0.97668 0.97971 1.20773 0.99785 1.00751 1.04053 1.21070 0.92820 0.97464 0.96222 1.18475 0.93449 1.02690 1.02590 1.18722 0.86755 0.94571 0.95945 1.26432 1.05277 1.03930 1.10262 1.84009 1.03198 1.35491 1.47581 1.24953 0.92715 0.93201 0.93795 1.41429 1.05812 1.38342 1.50349 1.67083 1.17204 1.25284 1.17185 0.90143 0.88472 0.85552 0.84661 0.85052 0.79521 0.75561 0.74035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.03 13.93 21.82 0.30 -46.73 15 2 C 0.05 2.48 5.45 85.24 0.46 2.95 15 3 Si 0.96 44.68 24.52 68.60 1.68 46.36 15 4 H -0.26 -11.28 6.56 99.48 0.65 -10.63 15 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 6 H -0.26 -12.84 6.95 99.48 0.69 -12.14 15 7 C -0.43 -24.39 8.20 23.30 0.19 -24.20 15 8 H 0.09 5.81 5.96 -2.91 -0.02 5.79 15 9 C 0.08 4.37 5.06 -21.10 -0.11 4.26 15 10 C -0.25 -12.27 7.09 22.45 0.16 -12.11 15 11 C -0.08 -3.11 9.96 22.02 0.22 -2.89 15 12 C -0.23 -8.86 10.02 22.38 0.22 -8.63 15 13 C -0.06 -2.28 9.47 22.47 0.21 -2.06 15 14 C -0.17 -8.09 5.93 -19.61 -0.12 -8.20 15 15 C 0.17 7.59 6.56 40.68 0.27 7.86 15 16 C -0.32 -11.61 10.59 67.14 0.71 -10.90 15 17 S 0.05 1.59 23.42 -56.49 -1.32 0.26 15 18 C 0.33 12.10 8.82 179.44 1.58 13.68 15 19 N -0.81 -22.54 9.06 -56.77 -0.51 -23.05 15 20 N -0.54 -25.38 7.09 -187.14 -1.33 -26.71 15 21 H 0.29 14.55 8.30 -92.71 -0.77 13.78 15 22 H 0.10 4.71 4.79 -2.91 -0.01 4.70 15 23 H 0.13 4.26 8.06 -2.91 -0.02 4.24 15 24 H 0.14 4.04 8.06 -2.91 -0.02 4.02 15 25 H 0.13 4.30 6.65 -2.91 -0.02 4.28 15 26 H 0.19 5.68 6.88 -2.91 -0.02 5.66 15 27 H 0.41 12.13 8.95 -92.70 -0.83 11.30 15 28 H 0.43 8.12 8.95 -92.71 -0.83 7.29 15 Total: -1.00 -65.77 252.39 2.13 -63.63 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: -0.50 Total: 26.46 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 3.81 Total: -40.23 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -1.54 Total: -96.49 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.68 Total: 46.36 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -1.32 Total: 0.26 kcal Total: -65.77 2.13 -63.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261358685.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.375 kcal (2) G-P(sol) polarization free energy of solvation -65.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds