Wall clock time and date at job start Mon Mar 30 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00481 * 3 2 1 5 5 H 1.48501 * 109.47358 * 29.99973 * 3 2 1 6 6 H 1.48496 * 109.47341 * 150.00585 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 11 11 C 1.50703 * 109.47151 * 180.27762 * 9 7 2 12 12 C 1.38263 * 119.99202 * 299.72850 * 11 9 7 13 13 C 1.38222 * 120.02281 * 179.76824 * 12 11 9 14 14 C 1.38239 * 120.01270 * 0.50564 * 13 12 11 15 15 C 1.38324 * 119.98863 * 359.74815 * 14 13 12 16 16 Cl 1.73599 * 120.01518 * 180.02562 * 15 14 13 17 17 C 1.38197 * 119.99440 * 120.00209 * 11 9 7 18 18 C 1.53005 * 109.47000 * 60.28391 * 9 7 2 19 19 F 1.39909 * 109.46562 * 299.99500 * 18 9 7 20 20 F 1.39897 * 109.47542 * 59.99523 * 18 9 7 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.08001 * 119.98819 * 359.97438 * 12 11 9 23 23 H 1.07996 * 119.99346 * 180.25825 * 13 12 11 24 24 H 1.07997 * 120.00327 * 179.72790 * 14 13 12 25 25 H 1.07997 * 120.00077 * 0.02562 * 17 11 9 26 26 H 1.08996 * 109.47069 * 180.02562 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 1 0.6245 -2.5529 0.8956 11 6 2.2305 -3.6445 0.0104 12 6 3.1309 -3.7885 -1.0290 13 6 4.0326 -4.8361 -1.0226 14 6 4.0277 -5.7464 0.0177 15 6 3.1237 -5.6058 1.0552 16 17 3.1174 -6.7481 2.3624 17 6 2.2247 -4.5539 1.0510 18 6 0.3715 -2.5858 -1.2435 19 9 -0.5377 -1.5224 -1.2481 20 9 1.1757 -2.5167 -2.3862 21 1 -0.4850 0.8400 0.0004 22 1 3.1318 -3.0804 -1.8444 23 1 4.7384 -4.9458 -1.8326 24 1 4.7294 -6.5673 0.0203 25 1 1.5181 -4.4439 1.8603 26 1 -0.1738 -3.5295 -1.2390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261359562.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:01 Heat of formation + Delta-G solvation = -86.269581 kcal Electronic energy + Delta-G solvation = -15753.732009 eV Core-core repulsion = 12686.831905 eV Total energy + Delta-G solvation = -3066.900104 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.15364 -47.08710 -40.21722 -37.43922 -35.67504 -33.36639 -31.58256 -29.60118 -26.70622 -24.16167 -23.49059 -21.80428 -18.65938 -18.13596 -17.59441 -17.19452 -16.83511 -16.41449 -16.10027 -15.55994 -14.76879 -14.51967 -14.29215 -13.88538 -13.73553 -13.51716 -12.98731 -12.94048 -12.67317 -12.51933 -12.32950 -12.26372 -11.99983 -11.77244 -11.35159 -10.97384 -10.49511 -9.71758 -9.45772 -8.02856 -6.22978 0.32768 0.43830 1.19617 1.41666 1.43245 1.52544 2.41245 2.79825 3.13841 3.51271 3.86321 4.01576 4.21550 4.29726 4.41071 4.53004 4.62800 4.66771 4.94159 5.13868 5.31110 5.35737 5.53602 5.72719 5.87372 5.97645 6.14600 6.73337 7.40568 8.88313 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028682 B = 0.007356 C = 0.007027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.995700 B = 3805.640525 C = 3983.560948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.017 3.983 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.056 0.944 9 C 0.035 3.965 10 H 0.040 0.960 11 C -0.056 4.056 12 C -0.115 4.115 13 C -0.105 4.105 14 C -0.120 4.120 15 C -0.040 4.040 16 Cl -0.072 7.072 17 C -0.123 4.123 18 C 0.260 3.740 19 F -0.180 7.180 20 F -0.224 7.224 21 H 0.257 0.743 22 H 0.125 0.875 23 H 0.158 0.842 24 H 0.157 0.843 25 H 0.127 0.873 26 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -10.586 -0.205 11.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.187 4.187 3 Si 0.781 3.219 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.578 4.578 8 H 0.074 0.926 9 C 0.015 3.985 10 H 0.058 0.942 11 C -0.057 4.057 12 C -0.133 4.133 13 C -0.123 4.123 14 C -0.138 4.138 15 C -0.067 4.067 16 Cl -0.043 7.043 17 C -0.141 4.141 18 C 0.206 3.794 19 F -0.161 7.161 20 F -0.206 7.206 21 H 0.067 0.933 22 H 0.142 0.858 23 H 0.176 0.824 24 H 0.174 0.826 25 H 0.145 0.855 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.226 -10.536 -0.099 11.761 hybrid contribution -0.010 1.132 0.130 1.139 sum 5.216 -9.404 0.031 10.754 Atomic orbital electron populations 1.70606 1.06624 1.26573 1.46927 1.25758 0.95809 1.02450 0.94634 0.85598 0.78780 0.79474 0.78072 1.20490 1.20742 1.19277 1.20991 0.92907 0.89851 1.54005 0.92587 1.18765 0.93163 0.92984 0.93542 0.94167 1.19964 0.97165 0.94233 0.94320 1.21500 0.94865 0.98404 0.98573 1.21409 0.98533 0.93473 0.98878 1.21253 0.98765 1.00951 0.92853 1.20925 0.99982 0.93577 0.92175 1.98333 1.98152 1.59509 1.48352 1.20995 0.99833 0.94035 0.99275 1.22481 0.84182 0.88255 0.84479 1.93156 1.67723 1.58884 1.96311 1.92768 1.75862 1.97323 1.54620 0.93307 0.85754 0.82394 0.82565 0.85504 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.38 9.51 21.45 0.20 -49.18 15 2 C 0.02 0.92 5.20 84.65 0.44 1.36 15 3 Si 0.95 43.57 29.54 68.60 2.03 45.60 15 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 15 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 15 7 C -0.54 -28.83 7.98 25.60 0.20 -28.63 15 8 H 0.06 3.00 7.61 -2.91 -0.02 2.98 15 9 C 0.03 1.65 2.36 -12.28 -0.03 1.62 15 10 H 0.04 2.04 7.88 -2.39 -0.02 2.02 15 11 C -0.06 -2.26 4.73 -19.87 -0.09 -2.35 15 12 C -0.12 -4.20 8.38 22.27 0.19 -4.01 15 13 C -0.11 -2.94 10.05 22.27 0.22 -2.72 15 14 C -0.12 -3.15 9.83 22.29 0.22 -2.93 15 15 C -0.04 -1.20 6.32 22.32 0.14 -1.06 15 16 Cl -0.07 -1.88 28.96 -2.72 -0.08 -1.95 15 17 C -0.12 -4.34 9.46 22.29 0.21 -4.13 15 18 C 0.26 12.11 4.83 71.98 0.35 12.45 15 19 F -0.18 -9.63 12.95 44.97 0.58 -9.05 15 20 F -0.22 -10.39 14.43 44.97 0.65 -9.74 15 21 H 0.26 14.03 8.31 -92.71 -0.77 13.26 15 22 H 0.12 4.88 6.36 -2.91 -0.02 4.86 15 23 H 0.16 3.31 8.06 -2.91 -0.02 3.28 15 24 H 0.16 3.08 8.06 -2.91 -0.02 3.06 15 25 H 0.13 4.38 7.94 -2.91 -0.02 4.35 15 26 H 0.09 3.48 8.14 -2.39 -0.02 3.46 15 Total: -1.00 -58.87 248.21 6.44 -52.43 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.20 Total: 2.30 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 1.85 Total: -30.41 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.20 Total: -49.18 kcal Atomic # 9 Polarization: -20.02 SS G_CDS: 1.23 Total: -18.79 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -1.88 SS G_CDS: -0.08 Total: -1.95 kcal Total: -58.87 6.44 -52.43 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359562.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.838 kcal (2) G-P(sol) polarization free energy of solvation -58.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds