Wall clock time and date at job start Mon Mar 30 2020 05:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00212 * 2 1 4 4 H 1.48494 * 109.47197 * 240.00431 * 3 2 1 5 5 H 1.48502 * 109.46940 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46871 * 120.00113 * 3 2 1 7 7 C 1.37876 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00147 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47013 * 60.00507 * 9 7 2 11 11 C 1.50699 * 109.47224 * 180.02562 * 9 7 2 12 12 C 1.38265 * 119.98996 * 240.00032 * 11 9 7 13 13 C 1.38225 * 120.02460 * 179.97438 * 12 11 9 14 14 C 1.38234 * 120.01137 * 0.02562 * 13 12 11 15 15 C 1.38325 * 119.98838 * 359.97438 * 14 13 12 16 16 Cl 1.73601 * 120.01311 * 180.02562 * 15 14 13 17 17 C 1.38186 * 119.99683 * 59.97618 * 11 9 7 18 18 C 1.52997 * 109.47098 * 300.00400 * 9 7 2 19 19 F 1.39897 * 109.47330 * 304.99751 * 18 9 7 20 20 F 1.39899 * 109.47386 * 65.00112 * 18 9 7 21 21 H 0.97003 * 119.99814 * 359.97438 * 1 2 3 22 22 H 1.07994 * 119.98951 * 359.72542 * 12 11 9 23 23 H 1.08002 * 119.99215 * 179.97438 * 13 12 11 24 24 H 1.07997 * 120.00461 * 179.97438 * 14 13 12 25 25 H 1.08001 * 120.00337 * 0.02562 * 17 11 9 26 26 H 1.08999 * 109.47337 * 184.99743 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8904 11 6 2.2302 -3.6446 -0.0005 12 6 2.2242 -4.5590 -1.0376 13 6 3.1224 -5.6097 -1.0386 14 6 4.0269 -5.7470 -0.0023 15 6 4.0334 -4.8325 1.0355 16 17 5.1695 -5.0039 2.3369 17 6 3.1343 -3.7807 1.0356 18 6 0.3718 -2.5804 1.2490 19 9 1.1618 -2.3925 2.3881 20 9 -0.6106 -1.5859 1.1935 21 1 -0.4850 0.8401 0.0004 22 1 1.5148 -4.4547 -1.8452 23 1 3.1170 -6.3239 -1.8488 24 1 4.7284 -6.5681 -0.0030 25 1 3.1389 -3.0663 1.8457 26 1 -0.1048 -3.5596 1.2949 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261359563.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:03 Heat of formation + Delta-G solvation = -89.039058 kcal Electronic energy + Delta-G solvation = -15813.776950 eV Core-core repulsion = 12746.756753 eV Total energy + Delta-G solvation = -3067.020197 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.14951 -47.09530 -40.21060 -37.42479 -35.69128 -33.35942 -31.54586 -29.60152 -26.71843 -24.20519 -23.40781 -21.79967 -18.66318 -18.17301 -17.56613 -17.15235 -16.76229 -16.42842 -16.17115 -15.61687 -14.61505 -14.55273 -14.28150 -13.87302 -13.71027 -13.46311 -13.06601 -13.01418 -12.70173 -12.43207 -12.35547 -12.30878 -11.97247 -11.85464 -11.31461 -10.96566 -10.52531 -9.68482 -9.47657 -8.04236 -6.24471 0.32259 0.46750 1.22753 1.40377 1.42582 1.49331 2.40436 2.80582 3.13282 3.51273 3.88846 4.04819 4.23164 4.24778 4.41277 4.55327 4.62531 4.79290 4.84089 5.20148 5.27771 5.42659 5.51411 5.71981 5.86842 5.96220 6.16188 6.72166 7.39763 8.87376 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.025275 B = 0.008245 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.558226 B = 3395.009450 C = 3585.866580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.019 3.981 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.035 3.965 10 H 0.049 0.951 11 C -0.059 4.059 12 C -0.122 4.122 13 C -0.099 4.099 14 C -0.122 4.122 15 C -0.045 4.045 16 Cl -0.079 7.079 17 C -0.116 4.116 18 C 0.260 3.740 19 F -0.227 7.227 20 F -0.183 7.183 21 H 0.258 0.742 22 H 0.138 0.862 23 H 0.167 0.833 24 H 0.156 0.844 25 H 0.116 0.884 26 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.946 -11.140 -0.871 12.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.578 4.578 8 H 0.070 0.930 9 C 0.016 3.984 10 H 0.067 0.933 11 C -0.059 4.059 12 C -0.140 4.140 13 C -0.117 4.117 14 C -0.140 4.140 15 C -0.071 4.071 16 Cl -0.050 7.050 17 C -0.134 4.134 18 C 0.205 3.795 19 F -0.209 7.209 20 F -0.164 7.164 21 H 0.068 0.932 22 H 0.156 0.844 23 H 0.185 0.815 24 H 0.174 0.826 25 H 0.134 0.866 26 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.860 -10.995 -0.730 12.043 hybrid contribution 0.284 1.376 0.465 1.480 sum 5.144 -9.619 -0.265 10.911 Atomic orbital electron populations 1.70556 1.06439 1.26710 1.47075 1.25734 0.95825 1.02288 0.94588 0.85731 0.78519 0.79462 0.78695 1.19300 1.20715 1.20415 1.20964 0.92779 0.90117 1.53984 0.92977 1.18786 0.93095 0.92837 0.93651 0.93322 1.20002 0.96333 0.95179 0.94428 1.21432 1.00195 0.94346 0.97986 1.21408 0.93899 0.97839 0.98564 1.21280 1.00740 0.99094 0.92877 1.21050 0.94943 0.98704 0.92446 1.98328 1.60035 1.97419 1.49245 1.21089 0.95176 0.97308 0.99866 1.22464 0.82986 0.89190 0.84820 1.92781 1.76556 1.96668 1.54890 1.93114 1.62884 1.64189 1.96233 0.93213 0.84436 0.81520 0.82619 0.86554 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.59 9.57 21.45 0.21 -49.39 15 2 C 0.02 1.05 5.26 84.65 0.45 1.49 15 3 Si 0.95 44.11 29.54 68.60 2.03 46.14 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 6 H -0.28 -12.96 7.11 99.48 0.71 -12.26 15 7 C -0.54 -29.21 7.86 25.60 0.20 -29.01 15 8 H 0.05 2.86 7.60 -2.91 -0.02 2.83 15 9 C 0.04 1.68 2.33 -12.29 -0.03 1.65 15 10 H 0.05 2.40 7.88 -2.39 -0.02 2.38 15 11 C -0.06 -2.34 4.73 -19.87 -0.09 -2.43 15 12 C -0.12 -3.84 9.67 22.27 0.22 -3.62 15 13 C -0.10 -2.46 10.05 22.27 0.22 -2.24 15 14 C -0.12 -3.16 9.83 22.29 0.22 -2.94 15 15 C -0.05 -1.46 6.32 22.32 0.14 -1.31 15 16 Cl -0.08 -2.32 28.96 -2.72 -0.08 -2.40 15 17 C -0.12 -4.53 8.27 22.29 0.18 -4.34 15 18 C 0.26 12.21 4.74 71.98 0.34 12.55 15 19 F -0.23 -11.13 14.60 44.97 0.66 -10.47 15 20 F -0.18 -9.83 13.20 44.97 0.59 -9.23 15 21 H 0.26 14.18 8.31 -92.71 -0.77 13.41 15 22 H 0.14 3.90 7.95 -2.91 -0.02 3.88 15 23 H 0.17 2.73 8.06 -2.91 -0.02 2.70 15 24 H 0.16 3.04 8.06 -2.91 -0.02 3.01 15 25 H 0.12 5.12 6.45 -2.91 -0.02 5.10 15 26 H 0.09 3.58 8.14 -2.39 -0.02 3.56 15 Total: -1.00 -60.74 248.69 6.45 -54.29 By element: Atomic # 1 Polarization: 0.07 SS G_CDS: 1.20 Total: 1.27 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 1.85 Total: -30.21 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.21 Total: -49.39 kcal Atomic # 9 Polarization: -20.96 SS G_CDS: 1.25 Total: -19.71 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.08 Total: -2.40 kcal Total: -60.74 6.45 -54.29 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261359563.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.747 kcal (2) G-P(sol) polarization free energy of solvation -60.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds