Wall clock time and date at job start Mon Mar 30 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99884 * 2 1 4 4 H 1.48501 * 109.46870 * 239.99589 * 3 2 1 5 5 H 1.48498 * 109.47197 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47274 * 119.99787 * 3 2 1 7 7 C 1.37878 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00076 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47655 * 179.97438 * 9 7 2 11 11 C 1.38371 * 120.00941 * 95.47777 * 10 9 7 12 12 Cl 1.73602 * 120.01112 * 0.03027 * 11 10 9 13 13 C 1.38338 * 119.97379 * 179.74587 * 11 10 9 14 14 C 1.38229 * 119.98426 * 0.25924 * 13 11 10 15 15 C 1.38216 * 120.01630 * 0.02562 * 14 13 11 16 16 C 1.38198 * 120.00368 * 275.73768 * 10 9 7 17 17 C 1.50700 * 119.99455 * 359.97438 * 16 10 9 18 18 F 1.39897 * 109.47038 * 115.45348 * 17 16 10 19 19 F 1.39901 * 109.46820 * 235.45405 * 17 16 10 20 20 H 0.96999 * 120.00194 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47441 * 59.99214 * 9 7 2 22 22 H 1.09009 * 109.46937 * 299.99963 * 9 7 2 23 23 H 1.07993 * 120.00403 * 180.23199 * 13 11 10 24 24 H 1.08000 * 119.99085 * 180.02562 * 14 13 11 25 25 H 1.07999 * 119.98694 * 180.02562 * 15 14 13 26 26 H 1.09000 * 109.46834 * 355.45262 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.5931 -4.2450 1.1933 12 17 1.9197 -3.6794 2.6901 13 6 3.4880 -5.2999 1.1919 14 6 4.0234 -5.7500 -0.0003 15 6 3.6652 -5.1461 -1.1908 16 6 2.7703 -4.0921 -1.1903 17 6 2.3794 -3.4350 -2.4888 18 9 3.4995 -2.8159 -3.0539 19 9 1.8865 -4.4024 -3.3711 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 3.7686 -5.7712 2.1222 24 1 4.7218 -6.5739 -0.0015 25 1 4.0835 -5.4985 -2.1221 26 1 1.6080 -2.6883 -2.3004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306597681.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:55 Heat of formation + Delta-G solvation = -97.698278 kcal Electronic energy + Delta-G solvation = -15610.842539 eV Core-core repulsion = 12543.446850 eV Total energy + Delta-G solvation = -3067.395689 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.42558 -46.39427 -39.09360 -35.87339 -33.83244 -31.84947 -30.85267 -27.39788 -25.68529 -23.53571 -21.54023 -20.47762 -17.15019 -16.91004 -16.73118 -16.34559 -15.44705 -14.77731 -14.60941 -14.32705 -13.44644 -13.11391 -12.94689 -12.80425 -12.46416 -12.14735 -11.74462 -11.67533 -11.21437 -11.03836 -10.87712 -10.76387 -10.30773 -10.09886 -9.73215 -9.53207 -8.57531 -8.50555 -8.09133 -6.14942 -4.20281 1.38804 1.66251 2.69707 3.29182 3.33021 3.36865 3.89063 4.27194 4.38181 4.82253 5.05371 5.20073 5.28751 5.43214 5.47693 5.67039 5.76910 6.00188 6.24849 6.48708 6.58050 6.68848 7.07472 7.29685 7.49154 7.79648 8.11584 8.83725 9.45107 10.94671 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.011101 C = 0.007826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.564433 B = 2521.682374 C = 3577.114941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.895 3.105 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.059 0.941 9 C 0.035 3.965 10 C 0.005 3.995 11 C -0.045 4.045 12 Cl -0.061 7.061 13 C -0.094 4.094 14 C -0.141 4.141 15 C -0.080 4.080 16 C -0.162 4.162 17 C 0.305 3.695 18 F -0.202 7.202 19 F -0.212 7.212 20 H 0.265 0.735 21 H 0.033 0.967 22 H 0.051 0.949 23 H 0.128 0.872 24 H 0.128 0.872 25 H 0.124 0.876 26 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.954 -9.208 -0.096 10.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.077 0.923 9 C -0.002 4.002 10 C 0.004 3.996 11 C -0.071 4.071 12 Cl -0.032 7.032 13 C -0.113 4.113 14 C -0.159 4.159 15 C -0.098 4.098 16 C -0.163 4.163 17 C 0.252 3.748 18 F -0.183 7.183 19 F -0.193 7.193 20 H 0.075 0.925 21 H 0.051 0.949 22 H 0.069 0.931 23 H 0.146 0.854 24 H 0.145 0.855 25 H 0.142 0.858 26 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.741 -9.038 0.001 10.206 hybrid contribution 0.550 0.898 0.082 1.056 sum 5.291 -8.139 0.083 9.708 Atomic orbital electron populations 1.69931 1.06002 1.27261 1.49504 1.24948 0.94857 0.99225 0.94700 0.86595 0.79630 0.82619 0.78965 1.19924 1.21134 1.20032 1.20858 0.92990 0.89165 1.52374 0.92302 1.18633 0.92637 0.89168 0.99717 1.20387 0.95131 0.94546 0.89531 1.20728 1.00406 0.98248 0.87742 1.98346 1.84373 1.89019 1.31469 1.21073 0.95919 0.95485 0.98832 1.20830 1.01974 1.01430 0.91651 1.20964 0.95732 0.94602 0.98532 1.20047 1.02169 0.99693 0.94365 1.20743 0.85901 0.86307 0.81817 1.92956 1.55579 1.83278 1.86477 1.92937 1.88046 1.66581 1.71753 0.92543 0.94877 0.93089 0.85363 0.85451 0.85818 0.84090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.98 13.29 55.43 0.74 -24.24 15 2 C 0.07 1.76 5.46 -17.82 -0.10 1.67 15 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 15 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.52 -13.59 8.94 -34.44 -0.31 -13.90 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 9 C 0.03 0.84 4.11 -29.04 -0.12 0.72 15 10 C 0.01 0.10 5.07 -104.59 -0.53 -0.43 15 11 C -0.04 -0.84 6.31 -39.50 -0.25 -1.09 15 12 Cl -0.06 -1.14 27.20 -51.86 -1.41 -2.55 15 13 C -0.09 -1.45 9.83 -39.55 -0.39 -1.84 15 14 C -0.14 -2.01 10.04 -39.59 -0.40 -2.41 15 15 C -0.08 -1.29 9.58 -39.58 -0.38 -1.67 15 16 C -0.16 -3.08 5.38 -104.63 -0.56 -3.64 15 17 C 0.31 5.84 5.25 36.01 0.19 6.03 15 18 F -0.20 -3.99 17.30 2.25 0.04 -3.95 15 19 F -0.21 -3.84 17.19 2.25 0.04 -3.80 15 20 H 0.26 7.10 8.31 -40.82 -0.34 6.76 15 21 H 0.03 0.82 6.34 -51.93 -0.33 0.49 15 22 H 0.05 1.29 6.68 -51.92 -0.35 0.95 15 23 H 0.13 1.62 8.06 -52.49 -0.42 1.19 15 24 H 0.13 1.37 8.06 -52.49 -0.42 0.95 15 25 H 0.12 1.75 8.06 -52.49 -0.42 1.32 15 26 H 0.14 2.86 5.44 -51.93 -0.28 2.58 15 LS Contribution 254.51 15.07 3.84 3.84 Total: -1.00 -27.70 254.51 -6.39 -34.10 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -1.77 Total: -2.83 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -2.84 Total: -16.56 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: 0.74 Total: -24.24 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.08 Total: -7.75 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -1.41 Total: -2.55 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.70 -6.39 -34.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306597681.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.600 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds