Wall clock time and date at job start Mon Mar 30 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 119.99884 * 2 1 4 4 H 1.48501 * 109.46870 * 239.99589 * 3 2 1 5 5 H 1.48498 * 109.47197 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47274 * 119.99787 * 3 2 1 7 7 C 1.37878 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00076 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00234 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47655 * 179.97438 * 9 7 2 11 11 C 1.38371 * 120.00941 * 95.47777 * 10 9 7 12 12 Cl 1.73602 * 120.01112 * 0.03027 * 11 10 9 13 13 C 1.38338 * 119.97379 * 179.74587 * 11 10 9 14 14 C 1.38229 * 119.98426 * 0.25924 * 13 11 10 15 15 C 1.38216 * 120.01630 * 0.02562 * 14 13 11 16 16 C 1.38198 * 120.00368 * 275.73768 * 10 9 7 17 17 C 1.50700 * 119.99455 * 359.97438 * 16 10 9 18 18 F 1.39897 * 109.47038 * 115.45348 * 17 16 10 19 19 F 1.39901 * 109.46820 * 235.45405 * 17 16 10 20 20 H 0.96999 * 120.00194 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47441 * 59.99214 * 9 7 2 22 22 H 1.09009 * 109.46937 * 299.99963 * 9 7 2 23 23 H 1.07993 * 120.00403 * 180.23199 * 13 11 10 24 24 H 1.08000 * 119.99085 * 180.02562 * 14 13 11 25 25 H 1.07999 * 119.98694 * 180.02562 * 15 14 13 26 26 H 1.09000 * 109.46834 * 355.45262 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.5931 -4.2450 1.1933 12 17 1.9197 -3.6794 2.6901 13 6 3.4880 -5.2999 1.1919 14 6 4.0234 -5.7500 -0.0003 15 6 3.6652 -5.1461 -1.1908 16 6 2.7703 -4.0921 -1.1903 17 6 2.3794 -3.4350 -2.4888 18 9 3.4995 -2.8159 -3.0539 19 9 1.8865 -4.4024 -3.3711 20 1 -0.4850 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8896 22 1 0.6241 -2.5567 0.8904 23 1 3.7686 -5.7712 2.1222 24 1 4.7218 -6.5739 -0.0015 25 1 4.0835 -5.4985 -2.1221 26 1 1.6080 -2.6883 -2.3004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306597681.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:55 Heat of formation + Delta-G solvation = -111.458911 kcal Electronic energy + Delta-G solvation = -15611.439245 eV Core-core repulsion = 12543.446850 eV Total energy + Delta-G solvation = -3067.992395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.95751 -47.92584 -40.46773 -37.28868 -35.64484 -33.52706 -32.28465 -29.13771 -27.15046 -25.35063 -22.95974 -21.96058 -18.63855 -18.56100 -18.34202 -18.10867 -16.92542 -16.35452 -16.16808 -15.77443 -14.98091 -14.71243 -14.43247 -14.33554 -13.99175 -13.80989 -13.45994 -13.27218 -12.77055 -12.69474 -12.45427 -12.39904 -11.99778 -11.73572 -11.59506 -11.21593 -10.57034 -9.93073 -9.53348 -8.20879 -6.32072 0.06300 0.30575 1.29706 1.41211 1.41894 1.49817 2.38456 2.59225 2.77385 3.12203 3.32219 3.73473 4.00596 4.07270 4.15425 4.18170 4.45140 4.71195 4.87529 5.01548 5.27828 5.32803 5.35014 5.66035 5.73365 5.80543 6.11549 6.77629 7.36143 8.88389 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.017677 B = 0.011101 C = 0.007826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.564433 B = 2521.682374 C = 3577.114941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.017 3.983 3 Si 0.951 3.049 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.519 4.519 8 H 0.051 0.949 9 C 0.045 3.955 10 C -0.027 4.027 11 C -0.061 4.061 12 Cl -0.071 7.071 13 C -0.085 4.085 14 C -0.118 4.118 15 C -0.080 4.080 16 C -0.176 4.176 17 C 0.311 3.689 18 F -0.206 7.206 19 F -0.205 7.205 20 H 0.266 0.734 21 H 0.015 0.985 22 H 0.029 0.971 23 H 0.163 0.837 24 H 0.177 0.823 25 H 0.148 0.852 26 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.050 -10.715 0.042 12.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.182 4.182 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.557 4.557 8 H 0.069 0.931 9 C 0.008 3.992 10 C -0.028 4.028 11 C -0.087 4.087 12 Cl -0.042 7.042 13 C -0.104 4.104 14 C -0.135 4.135 15 C -0.098 4.098 16 C -0.178 4.178 17 C 0.257 3.743 18 F -0.187 7.187 19 F -0.187 7.187 20 H 0.075 0.925 21 H 0.033 0.967 22 H 0.047 0.953 23 H 0.180 0.820 24 H 0.194 0.806 25 H 0.166 0.834 26 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.844 -10.552 0.137 12.578 hybrid contribution -0.065 1.253 0.018 1.255 sum 6.780 -9.298 0.155 11.509 Atomic orbital electron populations 1.70034 1.07308 1.27968 1.50812 1.25699 0.95577 1.02380 0.94589 0.85705 0.78559 0.79069 0.79061 1.19421 1.20608 1.19592 1.21082 0.92685 0.90551 1.51404 0.93094 1.18322 0.92962 0.90188 0.97712 1.20109 0.96321 0.95014 0.91395 1.20945 1.01586 0.99509 0.86699 1.98337 1.84742 1.89361 1.31777 1.21498 0.94072 0.93815 1.00972 1.21390 1.00860 1.01241 0.90043 1.21320 0.94534 0.93355 1.00613 1.20061 1.03475 1.01072 0.93145 1.20490 0.85242 0.86120 0.82426 1.92942 1.55669 1.83480 1.86622 1.92942 1.87980 1.66152 1.71605 0.92520 0.96680 0.95252 0.81990 0.80555 0.83431 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.25 13.29 21.45 0.28 -52.96 15 2 C 0.02 0.93 5.46 84.65 0.46 1.39 15 3 Si 0.95 43.47 29.54 68.60 2.03 45.49 15 4 H -0.27 -12.00 7.11 99.48 0.71 -11.30 15 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 15 7 C -0.52 -28.04 8.94 25.60 0.23 -27.81 15 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 15 9 C 0.04 2.23 4.11 29.10 0.12 2.35 15 10 C -0.03 -1.14 5.07 -19.84 -0.10 -1.24 15 11 C -0.06 -2.21 6.31 22.33 0.14 -2.07 15 12 Cl -0.07 -2.63 27.20 -2.72 -0.07 -2.70 15 13 C -0.09 -2.30 9.83 22.29 0.22 -2.08 15 14 C -0.12 -2.76 10.04 22.26 0.22 -2.54 15 15 C -0.08 -2.31 9.58 22.27 0.21 -2.10 15 16 C -0.18 -6.56 5.38 -19.87 -0.11 -6.67 15 17 C 0.31 11.92 5.25 71.24 0.37 12.30 15 18 F -0.21 -8.07 17.30 44.97 0.78 -7.29 15 19 F -0.21 -7.33 17.19 44.97 0.77 -6.56 15 20 H 0.27 14.57 8.31 -92.71 -0.77 13.80 15 21 H 0.02 0.79 6.34 -2.39 -0.02 0.78 15 22 H 0.03 1.56 6.68 -2.38 -0.02 1.54 15 23 H 0.16 3.28 8.06 -2.91 -0.02 3.25 15 24 H 0.18 2.51 8.06 -2.91 -0.02 2.49 15 25 H 0.15 3.54 8.06 -2.91 -0.02 3.52 15 26 H 0.12 5.09 5.44 -2.39 -0.01 5.08 15 Total: -1.00 -60.56 254.51 6.78 -53.78 By element: Atomic # 1 Polarization: -2.51 SS G_CDS: 1.21 Total: -1.30 kcal Atomic # 6 Polarization: -30.24 SS G_CDS: 1.77 Total: -28.46 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: 0.28 Total: -52.96 kcal Atomic # 9 Polarization: -15.40 SS G_CDS: 1.55 Total: -13.85 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -0.07 Total: -2.70 kcal Total: -60.56 6.78 -53.78 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306597681.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.676 kcal (2) G-P(sol) polarization free energy of solvation -60.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds