Wall clock time and date at job start Mon Mar 30 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38236 * 120.00128 * 264.99515 * 10 9 7 12 12 C 1.38227 * 120.00830 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.02931 * 0.04090 * 12 11 10 14 14 C 1.38200 * 120.00946 * 359.97438 * 13 12 11 15 15 C 1.50708 * 120.00413 * 179.97438 * 14 13 12 16 16 F 1.39896 * 109.47218 * 119.99739 * 15 14 13 17 17 F 1.39900 * 109.46647 * 240.00002 * 15 14 13 18 18 C 1.38330 * 120.00633 * 84.72580 * 10 9 7 19 19 Cl 1.73594 * 120.01323 * 359.97305 * 18 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07996 * 119.99831 * 0.02562 * 11 10 9 24 24 H 1.08003 * 119.98499 * 180.02562 * 12 11 10 25 25 H 1.08000 * 119.99523 * 180.02562 * 13 12 11 26 26 H 1.09005 * 109.46791 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6001 -4.2326 -1.2055 12 6 3.4987 -5.2829 -1.2104 13 6 4.0274 -5.7465 -0.0200 14 6 3.6581 -5.1597 1.1755 15 6 4.2340 -5.6656 2.4730 16 9 4.9285 -4.6314 3.1096 17 9 3.1979 -6.1105 3.3010 18 6 2.7633 -4.1042 1.1805 19 17 2.3051 -3.3613 2.6810 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.1876 -3.8707 -2.1357 24 1 3.7878 -5.7417 -2.1444 25 1 4.7298 -6.5669 -0.0244 26 1 4.9165 -6.4910 2.2702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306654747.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:40 Heat of formation + Delta-G solvation = -95.004142 kcal Electronic energy + Delta-G solvation = -15443.086528 eV Core-core repulsion = 12375.807666 eV Total energy + Delta-G solvation = -3067.278863 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.71413 -46.70704 -39.02937 -35.74383 -33.72508 -31.88761 -30.84278 -27.32457 -25.81068 -23.52482 -21.63704 -20.56606 -17.20527 -16.96293 -16.91596 -16.30920 -15.94245 -14.85200 -14.58592 -14.01231 -13.72311 -13.08041 -13.04130 -12.91064 -12.62322 -12.06741 -11.68918 -11.49275 -11.32269 -10.94981 -10.90644 -10.65639 -10.45025 -10.12750 -9.64414 -9.47639 -8.55562 -8.42618 -8.01990 -6.05583 -4.08719 1.37572 1.67097 2.77985 3.30391 3.37057 3.41978 3.91408 3.94975 4.29047 4.44971 4.71669 5.16900 5.23956 5.29450 5.35821 5.62657 5.80538 5.93489 6.23970 6.51905 6.65008 6.78751 7.17756 7.47605 7.63207 7.88912 8.24998 8.94049 9.54660 11.04764 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.008130 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.392990 B = 3443.174690 C = 3871.033535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.506 4.506 8 H 0.056 0.944 9 C 0.045 3.955 10 C -0.031 4.031 11 C -0.094 4.094 12 C -0.123 4.123 13 C -0.106 4.106 14 C -0.174 4.174 15 C 0.316 3.684 16 F -0.196 7.196 17 F -0.198 7.198 18 C -0.003 4.003 19 Cl -0.047 7.047 20 H 0.262 0.738 21 H 0.042 0.958 22 H 0.032 0.968 23 H 0.132 0.868 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.471 -12.052 0.718 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.008 3.992 10 C -0.031 4.031 11 C -0.113 4.113 12 C -0.142 4.142 13 C -0.125 4.125 14 C -0.175 4.175 15 C 0.262 3.738 16 F -0.177 7.177 17 F -0.179 7.179 18 C -0.030 4.030 19 Cl -0.018 7.018 20 H 0.072 0.928 21 H 0.060 0.940 22 H 0.050 0.950 23 H 0.150 0.850 24 H 0.144 0.856 25 H 0.145 0.855 26 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.264 -11.846 0.911 13.926 hybrid contribution 0.408 1.079 0.175 1.166 sum 7.672 -10.767 1.086 13.265 Atomic orbital electron populations 1.69949 1.05994 1.26846 1.50333 1.24944 0.94842 0.99122 0.95072 0.86558 0.79994 0.83222 0.78128 1.20607 1.21117 1.19715 1.20897 0.92848 0.89443 1.51248 0.92564 1.18471 0.92393 0.89010 0.99277 1.20723 0.96470 0.95870 0.90075 1.21248 0.96921 0.95007 0.98077 1.21104 0.97940 0.97586 0.97525 1.20614 1.00630 1.00163 0.91075 1.20180 1.02405 0.99918 0.95036 1.20282 0.83274 0.87066 0.83132 1.93028 1.79278 1.61765 1.83619 1.93013 1.61094 1.89486 1.74296 1.20668 0.98225 0.95031 0.89057 1.98372 1.91153 1.81774 1.30469 0.92813 0.93955 0.94954 0.84989 0.85640 0.85532 0.86872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 15 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 15 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 15 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 15 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.51 -13.94 9.09 -34.44 -0.31 -14.25 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.05 1.14 4.61 -29.03 -0.13 1.00 15 10 C -0.03 -0.65 5.07 -104.59 -0.53 -1.18 15 11 C -0.09 -1.66 9.68 -39.59 -0.38 -2.04 15 12 C -0.12 -1.75 10.05 -39.58 -0.40 -2.15 15 13 C -0.11 -1.45 9.67 -39.59 -0.38 -1.84 15 14 C -0.17 -2.87 5.37 -104.58 -0.56 -3.43 15 15 C 0.32 4.53 5.00 36.01 0.18 4.71 15 16 F -0.20 -3.23 16.39 2.25 0.04 -3.20 15 17 F -0.20 -3.14 16.43 2.25 0.04 -3.10 15 18 C 0.00 -0.06 6.25 -39.50 -0.25 -0.30 15 19 Cl -0.05 -1.00 25.06 -51.86 -1.30 -2.30 15 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.04 1.14 7.14 -51.93 -0.37 0.77 15 22 H 0.03 0.84 8.05 -51.93 -0.42 0.42 15 23 H 0.13 2.17 8.06 -52.49 -0.42 1.74 15 24 H 0.13 1.35 8.06 -52.48 -0.42 0.92 15 25 H 0.13 1.22 7.95 -52.49 -0.42 0.80 15 26 H 0.11 1.08 7.88 -51.93 -0.41 0.67 15 LS Contribution 255.45 15.07 3.85 3.85 Total: -1.00 -30.26 255.45 -6.53 -36.79 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: -2.00 Total: -5.42 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.87 Total: -17.84 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.07 Total: -6.30 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.30 Total: -2.30 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.26 -6.53 -36.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306654747.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.211 kcal (2) G-P(sol) polarization free energy of solvation -30.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds