Wall clock time and date at job start Mon Mar 30 2020 05:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38236 * 120.00128 * 264.99515 * 10 9 7 12 12 C 1.38227 * 120.00830 * 179.97438 * 11 10 9 13 13 C 1.38256 * 120.02931 * 0.04090 * 12 11 10 14 14 C 1.38200 * 120.00946 * 359.97438 * 13 12 11 15 15 C 1.50708 * 120.00413 * 179.97438 * 14 13 12 16 16 F 1.39896 * 109.47218 * 119.99739 * 15 14 13 17 17 F 1.39900 * 109.46647 * 240.00002 * 15 14 13 18 18 C 1.38330 * 120.00633 * 84.72580 * 10 9 7 19 19 Cl 1.73594 * 120.01323 * 359.97305 * 18 10 9 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07996 * 119.99831 * 0.02562 * 11 10 9 24 24 H 1.08003 * 119.98499 * 180.02562 * 12 11 10 25 25 H 1.08000 * 119.99523 * 180.02562 * 13 12 11 26 26 H 1.09005 * 109.46791 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6001 -4.2326 -1.2055 12 6 3.4987 -5.2829 -1.2104 13 6 4.0274 -5.7465 -0.0200 14 6 3.6581 -5.1597 1.1755 15 6 4.2340 -5.6656 2.4730 16 9 4.9285 -4.6314 3.1096 17 9 3.1979 -6.1105 3.3010 18 6 2.7633 -4.1042 1.1805 19 17 2.3051 -3.3613 2.6810 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.1876 -3.8707 -2.1357 24 1 3.7878 -5.7417 -2.1444 25 1 4.7298 -6.5669 -0.0244 26 1 4.9165 -6.4910 2.2702 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306654747.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:40 Heat of formation + Delta-G solvation = -112.071846 kcal Electronic energy + Delta-G solvation = -15443.826639 eV Core-core repulsion = 12375.807666 eV Total energy + Delta-G solvation = -3068.018974 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.86096 -47.87659 -40.36585 -37.26064 -35.60569 -33.55198 -32.22153 -29.13441 -27.00148 -25.40134 -22.92614 -22.02395 -18.56738 -18.35679 -18.12154 -18.08033 -17.21753 -16.54060 -16.21484 -15.26641 -15.00519 -14.61889 -14.47054 -14.26137 -13.96193 -13.76970 -13.35997 -13.04852 -12.81395 -12.65290 -12.46526 -12.36376 -12.02438 -11.82238 -11.58883 -11.20711 -10.58840 -9.89599 -9.49096 -8.20199 -6.30782 0.07524 0.36067 1.30936 1.37232 1.39010 1.49791 2.38024 2.66421 2.84495 3.12321 3.28682 3.59374 4.09709 4.12373 4.19466 4.40770 4.47423 4.62476 4.93760 5.13792 5.26797 5.34715 5.42609 5.73036 5.78603 5.89006 6.15702 6.78984 7.36333 8.89970 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.027705 B = 0.008130 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.392990 B = 3443.174690 C = 3871.033535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.514 4.514 8 H 0.049 0.951 9 C 0.056 3.944 10 C -0.071 4.071 11 C -0.105 4.105 12 C -0.107 4.107 13 C -0.081 4.081 14 C -0.182 4.182 15 C 0.309 3.691 16 F -0.213 7.213 17 F -0.211 7.211 18 C -0.030 4.030 19 Cl -0.077 7.077 20 H 0.264 0.736 21 H 0.011 0.989 22 H 0.010 0.990 23 H 0.134 0.866 24 H 0.174 0.826 25 H 0.187 0.813 26 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.137 -14.007 -0.374 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.189 4.189 3 Si 0.781 3.219 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.067 0.933 9 C 0.019 3.981 10 C -0.072 4.072 11 C -0.123 4.123 12 C -0.125 4.125 13 C -0.099 4.099 14 C -0.183 4.183 15 C 0.256 3.744 16 F -0.194 7.194 17 F -0.192 7.192 18 C -0.057 4.057 19 Cl -0.048 7.048 20 H 0.073 0.927 21 H 0.029 0.971 22 H 0.028 0.972 23 H 0.152 0.848 24 H 0.191 0.809 25 H 0.204 0.796 26 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 9.937 -13.809 -0.186 17.013 hybrid contribution -0.387 1.557 0.450 1.667 sum 9.549 -12.251 0.264 15.536 Atomic orbital electron populations 1.70068 1.07494 1.27749 1.51528 1.25790 0.95654 1.02679 0.94787 0.85569 0.78593 0.79021 0.78682 1.19233 1.20706 1.19503 1.21158 0.92595 0.90903 1.50512 0.93273 1.18126 0.92796 0.90595 0.96574 1.20422 0.97909 0.96475 0.92364 1.21409 0.97976 0.96206 0.96687 1.21611 0.95457 0.95440 0.99955 1.21317 0.99441 0.99939 0.89205 1.20640 1.01320 0.98723 0.97643 1.20961 0.83706 0.88153 0.81580 1.92994 1.79491 1.63031 1.83885 1.92987 1.62094 1.89500 1.74653 1.20896 1.00304 0.96966 0.87521 1.98347 1.91662 1.82613 1.32150 0.92679 0.97064 0.97197 0.84805 0.80899 0.79626 0.80507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.04 15 2 C 0.01 0.52 5.46 84.66 0.46 0.99 15 3 Si 0.96 45.08 29.54 68.60 2.03 47.11 15 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 15 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 6 H -0.27 -12.54 7.11 99.48 0.71 -11.83 15 7 C -0.51 -29.35 9.09 25.60 0.23 -29.12 15 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 15 9 C 0.06 2.99 4.61 29.10 0.13 3.12 15 10 C -0.07 -3.07 5.07 -19.84 -0.10 -3.17 15 11 C -0.10 -3.55 9.68 22.27 0.22 -3.33 15 12 C -0.11 -2.52 10.05 22.27 0.22 -2.29 15 13 C -0.08 -1.75 9.67 22.26 0.22 -1.54 15 14 C -0.18 -5.46 5.37 -19.84 -0.11 -5.57 15 15 C 0.31 7.83 5.00 71.24 0.36 8.19 15 16 F -0.21 -6.65 16.39 44.97 0.74 -5.92 15 17 F -0.21 -6.34 16.43 44.97 0.74 -5.60 15 18 C -0.03 -1.22 6.25 22.32 0.14 -1.08 15 19 Cl -0.08 -3.39 25.06 -2.72 -0.07 -3.46 15 20 H 0.26 15.10 8.31 -92.70 -0.77 14.33 15 21 H 0.01 0.65 7.14 -2.38 -0.02 0.63 15 22 H 0.01 0.54 8.05 -2.39 -0.02 0.53 15 23 H 0.13 4.34 8.06 -2.91 -0.02 4.31 15 24 H 0.17 2.50 8.06 -2.91 -0.02 2.48 15 25 H 0.19 1.90 7.95 -2.91 -0.02 1.88 15 26 H 0.18 2.26 7.88 -2.38 -0.02 2.24 15 Total: -1.00 -70.61 255.45 6.69 -63.92 By element: Atomic # 1 Polarization: -7.41 SS G_CDS: 1.20 Total: -6.20 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 1.77 Total: -33.80 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.28 Total: -56.04 kcal Atomic # 9 Polarization: -12.99 SS G_CDS: 1.48 Total: -11.52 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 17 Polarization: -3.39 SS G_CDS: -0.07 Total: -3.46 kcal Total: -70.61 6.69 -63.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306654747.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.154 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds