Wall clock time and date at job start Mon Mar 30 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99855 * 2 1 4 4 H 1.48498 * 109.47226 * 270.00203 * 3 2 1 5 5 H 1.48501 * 109.47344 * 30.00390 * 3 2 1 6 6 H 1.48500 * 109.46850 * 149.99932 * 3 2 1 7 7 C 1.37878 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99936 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99791 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.38269 * 119.99066 * 270.25366 * 10 9 7 12 12 C 1.38215 * 120.02528 * 180.25750 * 11 10 9 13 13 C 1.38238 * 120.01126 * 359.48345 * 12 11 10 14 14 C 1.50708 * 120.00493 * 180.27922 * 13 12 11 15 15 F 1.39898 * 109.47051 * 300.00132 * 14 13 12 16 16 F 1.39893 * 109.47054 * 60.00493 * 14 13 12 17 17 C 1.38325 * 119.98894 * 0.26286 * 13 12 11 18 18 Cl 1.73598 * 120.01483 * 180.02562 * 17 13 12 19 19 C 1.38184 * 119.99552 * 89.99875 * 10 9 7 20 20 H 0.97003 * 119.99914 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47381 * 59.99767 * 9 7 2 22 22 H 1.09002 * 109.46975 * 299.99601 * 9 7 2 23 23 H 1.07997 * 119.98427 * 0.02562 * 11 10 9 24 24 H 1.08002 * 119.99636 * 179.76953 * 12 11 10 25 25 H 1.08994 * 109.46910 * 180.02562 * 14 13 12 26 26 H 1.08003 * 120.00655 * 0.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 -0.0013 11 6 4.2388 -3.2696 1.1956 12 6 4.7045 -4.5709 1.1952 13 6 4.9356 -5.2222 -0.0021 14 6 5.4375 -6.6433 -0.0024 15 9 6.6694 -6.7029 0.6580 16 9 4.5152 -7.4636 0.6560 17 6 4.7058 -4.5695 -1.1998 18 17 4.9951 -5.3870 -2.7037 19 6 4.2446 -3.2649 -1.1987 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6808 0.8904 22 1 3.8751 -0.6797 -0.8895 23 1 4.0540 -2.7627 2.1311 24 1 4.8836 -5.0806 2.1303 25 1 5.5597 -6.9852 -1.0300 26 1 4.0653 -2.7546 -2.1336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306782424.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:33 Heat of formation + Delta-G solvation = -97.297232 kcal Electronic energy + Delta-G solvation = -15030.837921 eV Core-core repulsion = 11963.459623 eV Total energy + Delta-G solvation = -3067.378298 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.93358 -46.91793 -39.21806 -36.54322 -33.85807 -32.06645 -30.57252 -28.91661 -25.47683 -22.68571 -22.55675 -20.47960 -17.54870 -17.31512 -17.17198 -16.92053 -15.61982 -14.99480 -14.44251 -14.08851 -13.89252 -13.62581 -13.30658 -13.26511 -12.90753 -12.51014 -11.99449 -11.96131 -11.53888 -11.38337 -11.09058 -10.74779 -10.59646 -10.21654 -10.10365 -9.54791 -8.71111 -8.61663 -8.33989 -6.19468 -4.21101 1.27062 1.49067 2.08943 3.20329 3.29086 3.29636 3.75571 3.83841 4.21304 4.30174 4.58014 5.04378 5.08731 5.14090 5.40078 5.59695 5.65078 5.83113 6.06804 6.33296 6.53693 6.61609 6.78548 7.06590 7.22311 7.51656 8.33306 8.84003 9.38969 10.93011 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.005937 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.377640 B = 4715.239230 C = 5007.599615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.075 0.925 9 C 0.011 3.989 10 C 0.007 3.993 11 C -0.118 4.118 12 C -0.068 4.068 13 C -0.193 4.193 14 C 0.312 3.688 15 F -0.201 7.201 16 F -0.199 7.199 17 C -0.002 4.002 18 Cl -0.076 7.076 19 C -0.113 4.113 20 H 0.266 0.734 21 H 0.035 0.965 22 H 0.030 0.970 23 H 0.135 0.865 24 H 0.130 0.870 25 H 0.118 0.882 26 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.466 -9.482 -1.300 14.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.094 0.906 9 C -0.026 4.026 10 C 0.006 3.994 11 C -0.136 4.136 12 C -0.086 4.086 13 C -0.194 4.194 14 C 0.258 3.742 15 F -0.182 7.182 16 F -0.181 7.181 17 C -0.028 4.028 18 Cl -0.047 7.047 19 C -0.132 4.132 20 H 0.076 0.924 21 H 0.054 0.946 22 H 0.048 0.952 23 H 0.152 0.848 24 H 0.148 0.852 25 H 0.135 0.865 26 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.332 -9.465 -1.404 14.831 hybrid contribution 0.255 0.733 -0.058 0.778 sum 11.587 -8.732 -1.462 14.582 Atomic orbital electron populations 1.69888 1.06287 1.27226 1.49803 1.24978 0.94749 0.99048 0.94194 0.86809 0.80379 0.83590 0.78777 1.20016 1.21088 1.18869 1.20839 0.87722 0.94921 1.52387 0.90640 1.18916 0.97863 0.87645 0.98139 1.20469 0.89409 0.98189 0.91314 1.21224 0.99234 0.94066 0.99056 1.20844 0.96682 0.94844 0.96266 1.19836 1.10069 0.95879 0.93632 1.20429 0.73272 0.87494 0.93007 1.92989 1.44298 1.97012 1.83950 1.93000 1.66920 1.74164 1.83966 1.20608 1.03113 0.93968 0.85136 1.98339 1.94738 1.78973 1.32628 1.21006 1.00201 0.92089 0.99913 0.92371 0.94645 0.95212 0.84753 0.85203 0.86504 0.84318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.96 55.43 0.77 -25.66 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 3 Si 0.88 20.31 27.47 -169.99 -4.67 15.64 15 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 15 6 H -0.26 -5.79 6.54 56.52 0.37 -5.42 15 7 C -0.52 -13.97 9.65 -34.44 -0.33 -14.30 15 8 H 0.08 2.23 7.98 -52.49 -0.42 1.81 15 9 C 0.01 0.25 4.17 -29.03 -0.12 0.13 15 10 C 0.01 0.13 5.07 -104.63 -0.53 -0.40 15 11 C -0.12 -2.03 9.70 -39.58 -0.38 -2.41 15 12 C -0.07 -1.06 9.60 -39.59 -0.38 -1.44 15 13 C -0.19 -2.97 5.37 -104.59 -0.56 -3.53 15 14 C 0.31 4.23 5.35 36.01 0.19 4.43 15 15 F -0.20 -2.81 17.26 2.25 0.04 -2.77 15 16 F -0.20 -2.91 17.26 2.25 0.04 -2.87 15 17 C 0.00 -0.03 6.31 -39.50 -0.25 -0.27 15 18 Cl -0.08 -1.01 27.01 -51.86 -1.40 -2.42 15 19 C -0.11 -2.00 9.49 -39.55 -0.38 -2.37 15 20 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 21 H 0.04 0.76 7.15 -51.93 -0.37 0.39 15 22 H 0.03 0.63 7.51 -51.93 -0.39 0.24 15 23 H 0.13 2.14 8.06 -52.49 -0.42 1.72 15 24 H 0.13 1.74 8.06 -52.49 -0.42 1.32 15 25 H 0.12 1.37 6.17 -51.93 -0.32 1.05 15 26 H 0.14 2.34 8.06 -52.48 -0.42 1.92 15 LS Contribution 255.17 15.07 3.85 3.85 Total: -1.00 -28.35 255.17 -6.15 -34.49 By element: Atomic # 1 Polarization: -0.07 SS G_CDS: -1.94 Total: -2.00 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -2.84 Total: -18.26 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.77 Total: -25.66 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.08 Total: -5.65 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.40 Total: -2.42 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -28.35 -6.15 -34.49 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306782424.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.802 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds