Wall clock time and date at job start Mon Mar 30 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99855 * 2 1 4 4 H 1.48498 * 109.47226 * 270.00203 * 3 2 1 5 5 H 1.48501 * 109.47344 * 30.00390 * 3 2 1 6 6 H 1.48500 * 109.46850 * 149.99932 * 3 2 1 7 7 C 1.37878 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99936 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99791 * 180.02562 * 7 2 1 10 10 C 1.50702 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.38269 * 119.99066 * 270.25366 * 10 9 7 12 12 C 1.38215 * 120.02528 * 180.25750 * 11 10 9 13 13 C 1.38238 * 120.01126 * 359.48345 * 12 11 10 14 14 C 1.50708 * 120.00493 * 180.27922 * 13 12 11 15 15 F 1.39898 * 109.47051 * 300.00132 * 14 13 12 16 16 F 1.39893 * 109.47054 * 60.00493 * 14 13 12 17 17 C 1.38325 * 119.98894 * 0.26286 * 13 12 11 18 18 Cl 1.73598 * 120.01483 * 180.02562 * 17 13 12 19 19 C 1.38184 * 119.99552 * 89.99875 * 10 9 7 20 20 H 0.97003 * 119.99914 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47381 * 59.99767 * 9 7 2 22 22 H 1.09002 * 109.46975 * 299.99601 * 9 7 2 23 23 H 1.07997 * 119.98427 * 0.02562 * 11 10 9 24 24 H 1.08002 * 119.99636 * 179.76953 * 12 11 10 25 25 H 1.08994 * 109.46910 * 180.02562 * 14 13 12 26 26 H 1.08003 * 120.00655 * 0.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 0.0000 10 6 4.0138 -2.6149 -0.0013 11 6 4.2388 -3.2696 1.1956 12 6 4.7045 -4.5709 1.1952 13 6 4.9356 -5.2222 -0.0021 14 6 5.4375 -6.6433 -0.0024 15 9 6.6694 -6.7029 0.6580 16 9 4.5152 -7.4636 0.6560 17 6 4.7058 -4.5695 -1.1998 18 17 4.9951 -5.3870 -2.7037 19 6 4.2446 -3.2649 -1.1987 20 1 -0.4850 0.8401 0.0004 21 1 3.8745 -0.6808 0.8904 22 1 3.8751 -0.6797 -0.8895 23 1 4.0540 -2.7627 2.1311 24 1 4.8836 -5.0806 2.1303 25 1 5.5597 -6.9852 -1.0300 26 1 4.0653 -2.7546 -2.1336 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306782424.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:33 Heat of formation + Delta-G solvation = -112.045511 kcal Electronic energy + Delta-G solvation = -15031.477455 eV Core-core repulsion = 11963.459623 eV Total energy + Delta-G solvation = -3068.017832 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.04541 -48.03072 -40.53178 -37.73806 -35.58835 -33.83052 -31.86417 -30.54251 -26.95057 -24.23918 -23.93864 -21.92468 -18.99379 -18.71713 -18.47436 -18.27638 -17.04079 -16.32045 -16.17827 -15.50344 -15.03478 -14.90722 -14.66974 -14.52580 -14.41374 -13.98493 -13.60513 -13.47747 -12.84665 -12.70276 -12.50438 -12.24391 -12.16257 -11.88649 -11.65094 -11.43652 -10.79483 -9.93291 -9.73284 -8.30362 -6.37050 -0.04504 0.18192 0.87165 1.39387 1.40870 1.51855 2.35469 2.49200 2.61416 3.04580 3.11877 3.45516 3.84770 3.98159 4.01390 4.31159 4.32225 4.50168 4.74216 4.96837 5.02990 5.11300 5.19314 5.51052 5.69245 5.73384 6.22109 6.69675 7.26967 8.85902 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.034081 B = 0.005937 C = 0.005590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.377640 B = 4715.239230 C = 5007.599615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.240 1.240 7 C -0.524 4.524 8 H 0.030 0.970 9 C 0.016 3.984 10 C -0.022 4.022 11 C -0.123 4.123 12 C -0.066 4.066 13 C -0.192 4.192 14 C 0.317 3.683 15 F -0.201 7.201 16 F -0.204 7.204 17 C -0.003 4.003 18 Cl -0.051 7.051 19 C -0.123 4.123 20 H 0.268 0.732 21 H 0.044 0.956 22 H 0.039 0.961 23 H 0.142 0.858 24 H 0.154 0.846 25 H 0.140 0.860 26 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.503 -9.769 -1.378 16.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.163 1.163 7 C -0.561 4.561 8 H 0.048 0.952 9 C -0.021 4.021 10 C -0.022 4.022 11 C -0.141 4.141 12 C -0.085 4.085 13 C -0.194 4.194 14 C 0.263 3.737 15 F -0.182 7.182 16 F -0.185 7.185 17 C -0.029 4.029 18 Cl -0.022 7.022 19 C -0.141 4.141 20 H 0.077 0.923 21 H 0.062 0.938 22 H 0.057 0.943 23 H 0.160 0.840 24 H 0.171 0.829 25 H 0.157 0.843 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.394 -9.773 -1.483 16.647 hybrid contribution -0.391 0.661 -0.064 0.771 sum 13.003 -9.112 -1.547 15.953 Atomic orbital electron populations 1.70053 1.08424 1.28372 1.51903 1.25956 0.95535 1.03374 0.93806 0.85676 0.79688 0.78072 0.79376 1.19064 1.21183 1.16336 1.21087 0.90504 0.93152 1.51403 0.95183 1.18763 0.94462 0.90113 0.98736 1.20320 0.91745 0.97340 0.92836 1.21351 0.99211 0.94866 0.98718 1.21103 0.95689 0.94200 0.97460 1.20147 1.08949 0.96846 0.93434 1.20517 0.72944 0.86269 0.93951 1.92994 1.44204 1.96922 1.84074 1.92996 1.67194 1.74135 1.84187 1.20610 1.02359 0.93523 0.86449 1.98346 1.94501 1.78277 1.31112 1.21044 1.00580 0.93022 0.99489 0.92302 0.93797 0.94297 0.84019 0.82884 0.84321 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.68 13.96 21.45 0.30 -57.38 15 2 C 0.01 0.61 5.47 84.65 0.46 1.07 15 3 Si 0.95 41.56 27.47 68.60 1.88 43.45 15 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 15 5 H -0.29 -12.48 7.11 99.48 0.71 -11.77 15 6 H -0.24 -9.51 6.54 99.48 0.65 -8.86 15 7 C -0.52 -28.70 9.65 25.60 0.25 -28.46 15 8 H 0.03 1.86 7.98 -2.91 -0.02 1.84 15 9 C 0.02 0.71 4.17 29.10 0.12 0.83 15 10 C -0.02 -0.83 5.07 -19.87 -0.10 -0.94 15 11 C -0.12 -4.13 9.70 22.27 0.22 -3.91 15 12 C -0.07 -1.94 9.60 22.26 0.21 -1.72 15 13 C -0.19 -5.51 5.37 -19.84 -0.11 -5.62 15 14 C 0.32 7.74 5.35 71.24 0.38 8.12 15 15 F -0.20 -5.03 17.26 44.97 0.78 -4.26 15 16 F -0.20 -5.46 17.26 44.97 0.78 -4.68 15 17 C 0.00 -0.08 6.31 22.32 0.14 0.06 15 18 Cl -0.05 -1.27 27.01 -2.72 -0.07 -1.34 15 19 C -0.12 -4.23 9.49 22.29 0.21 -4.02 15 20 H 0.27 15.20 8.31 -92.71 -0.77 14.43 15 21 H 0.04 1.82 7.15 -2.39 -0.02 1.80 15 22 H 0.04 1.61 7.51 -2.39 -0.02 1.59 15 23 H 0.14 4.40 8.06 -2.91 -0.02 4.37 15 24 H 0.15 3.69 8.06 -2.91 -0.02 3.67 15 25 H 0.14 2.81 6.17 -2.39 -0.01 2.80 15 26 H 0.14 4.65 8.06 -2.91 -0.02 4.63 15 Total: -1.00 -61.37 255.17 6.60 -54.77 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: 1.15 Total: 4.01 kcal Atomic # 6 Polarization: -36.36 SS G_CDS: 1.79 Total: -34.58 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: 0.30 Total: -57.38 kcal Atomic # 9 Polarization: -10.49 SS G_CDS: 1.55 Total: -8.94 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.45 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.07 Total: -1.34 kcal Total: -61.37 6.60 -54.77 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306782424.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.275 kcal (2) G-P(sol) polarization free energy of solvation -61.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds