Wall clock time and date at job start Mon Mar 30 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99981 * 2 1 4 4 H 1.48507 * 109.47543 * 270.00734 * 3 2 1 5 5 H 1.48507 * 109.47157 * 30.00486 * 3 2 1 6 6 H 1.48501 * 109.47577 * 150.00418 * 3 2 1 7 7 C 1.37876 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99978 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99884 * 179.97438 * 7 2 1 10 10 C 1.50701 * 109.46924 * 179.97438 * 9 7 2 11 11 C 1.38268 * 119.98889 * 265.00519 * 10 9 7 12 12 C 1.38192 * 120.01363 * 180.30113 * 11 10 9 13 13 C 1.38379 * 119.98375 * 359.44094 * 12 11 10 14 14 Cl 1.73598 * 120.00887 * 180.29775 * 13 12 11 15 15 C 1.38327 * 119.97618 * 0.55843 * 13 12 11 16 16 C 1.38224 * 119.98839 * 85.02383 * 10 9 7 17 17 C 1.50706 * 119.99015 * 359.97438 * 16 10 9 18 18 F 1.39901 * 109.46887 * 209.99838 * 17 16 10 19 19 F 1.39901 * 109.46959 * 330.00066 * 17 16 10 20 20 H 0.96997 * 120.00119 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.47148 * 60.00217 * 9 7 2 22 22 H 1.08991 * 109.47589 * 299.99905 * 9 7 2 23 23 H 1.08002 * 119.98896 * 0.02562 * 11 10 9 24 24 H 1.08004 * 120.00417 * 179.72827 * 12 11 10 25 25 H 1.08001 * 120.00718 * 179.74565 * 15 13 12 26 26 H 1.08997 * 109.46630 * 90.00144 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7002 6 1 3.5468 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0140 -2.6147 -0.0010 11 6 4.3431 -3.2313 1.1920 12 6 4.8098 -4.5320 1.1922 13 6 4.9366 -5.2214 -0.0009 14 17 5.5154 -6.8580 -0.0007 15 6 4.6071 -4.6041 -1.1942 16 6 4.1459 -3.3010 -1.1936 17 6 3.7868 -2.6283 -2.4935 18 9 3.3394 -3.5885 -3.4073 19 9 2.7734 -1.6904 -2.2688 20 1 -0.4850 0.8400 0.0004 21 1 3.8752 -0.6803 0.8889 22 1 3.8746 -0.6799 -0.8910 23 1 4.2397 -2.6946 2.1236 24 1 5.0710 -5.0120 2.1238 25 1 4.7098 -5.1403 -2.1260 26 1 4.6653 -2.1245 -2.8966 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306907718.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:59 Heat of formation + Delta-G solvation = -99.921510 kcal Electronic energy + Delta-G solvation = -15659.565894 eV Core-core repulsion = 12592.073798 eV Total energy + Delta-G solvation = -3067.492096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.79983 -47.81368 -40.43120 -37.53785 -35.28503 -33.33989 -32.81499 -29.57735 -26.97759 -24.86047 -23.13721 -21.86009 -19.04162 -18.46292 -18.23363 -17.95406 -16.80899 -16.30552 -16.19192 -15.67904 -14.89591 -14.55458 -14.48525 -14.45567 -14.21316 -13.74994 -13.44507 -13.20184 -12.84633 -12.59430 -12.35763 -12.05548 -11.82245 -11.80592 -11.51475 -11.42735 -10.69007 -10.04384 -9.45504 -8.20103 -6.20305 0.08452 0.22531 1.09889 1.40733 1.41666 1.51640 2.41523 2.52111 2.95449 3.13448 3.36818 3.72394 3.94955 4.08931 4.12718 4.19616 4.42523 4.65000 4.82514 5.05662 5.08263 5.14408 5.25611 5.59081 5.70498 5.76929 6.30658 6.79129 7.38261 8.97299 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.031792 B = 0.007564 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.515167 B = 3700.923649 C = 4200.515906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.008 3.992 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.238 1.238 7 C -0.483 4.483 8 H 0.022 0.978 9 C 0.013 3.987 10 C -0.024 4.024 11 C -0.118 4.118 12 C -0.086 4.086 13 C -0.058 4.058 14 Cl -0.062 7.062 15 C -0.080 4.080 16 C -0.172 4.172 17 C 0.299 3.701 18 F -0.213 7.213 19 F -0.186 7.186 20 H 0.263 0.737 21 H 0.038 0.962 22 H 0.041 0.959 23 H 0.146 0.854 24 H 0.161 0.839 25 H 0.150 0.850 26 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.338 -7.657 -1.003 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.188 4.188 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.215 1.215 6 H -0.161 1.161 7 C -0.521 4.521 8 H 0.040 0.960 9 C -0.024 4.024 10 C -0.024 4.024 11 C -0.136 4.136 12 C -0.104 4.104 13 C -0.085 4.085 14 Cl -0.033 7.033 15 C -0.099 4.099 16 C -0.173 4.173 17 C 0.246 3.754 18 F -0.194 7.194 19 F -0.167 7.167 20 H 0.072 0.928 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.164 0.836 24 H 0.178 0.822 25 H 0.167 0.833 26 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 14.216 -7.701 -1.023 16.200 hybrid contribution -0.541 0.557 -0.133 0.788 sum 13.675 -7.144 -1.156 15.472 Atomic orbital electron populations 1.70059 1.08375 1.27802 1.53435 1.25819 0.95392 1.02971 0.94639 0.85800 0.79879 0.78742 0.79127 1.19444 1.21520 1.16123 1.20828 0.90060 0.92508 1.48735 0.95953 1.18933 0.94844 0.90169 0.98473 1.20131 0.92237 0.97427 0.92653 1.21232 0.99300 0.95001 0.98088 1.21363 0.97527 0.93750 0.97775 1.20778 1.05316 0.87433 0.94949 1.98346 1.87257 1.18747 1.98925 1.20825 0.97617 0.92985 0.98470 1.20360 1.05802 0.96054 0.95105 1.20704 0.89083 0.79971 0.85690 1.92927 1.91577 1.66166 1.68771 1.93263 1.63750 1.65058 1.94659 0.92778 0.94422 0.94051 0.83638 0.82177 0.83276 0.82956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.02 13.96 21.45 0.30 -59.72 15 2 C 0.01 0.44 5.47 84.65 0.46 0.90 15 3 Si 0.94 42.93 27.47 68.60 1.88 44.81 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.29 -13.17 7.11 99.48 0.71 -12.46 15 6 H -0.24 -9.69 6.54 99.48 0.65 -9.04 15 7 C -0.48 -26.93 7.33 25.60 0.19 -26.74 15 8 H 0.02 1.42 7.98 -2.91 -0.02 1.40 15 9 C 0.01 0.56 3.43 29.10 0.10 0.66 15 10 C -0.02 -0.91 5.06 -19.86 -0.10 -1.01 15 11 C -0.12 -3.79 9.68 22.27 0.22 -3.57 15 12 C -0.09 -2.31 9.83 22.29 0.22 -2.09 15 13 C -0.06 -1.60 6.32 22.32 0.14 -1.46 15 14 Cl -0.06 -1.42 28.96 -2.72 -0.08 -1.50 15 15 C -0.08 -2.38 9.18 22.29 0.20 -2.18 15 16 C -0.17 -5.96 5.73 -19.87 -0.11 -6.08 15 17 C 0.30 10.17 5.20 71.24 0.37 10.54 15 18 F -0.21 -7.32 16.48 44.97 0.74 -6.57 15 19 F -0.19 -8.43 12.15 44.97 0.55 -7.88 15 20 H 0.26 15.52 8.31 -92.71 -0.77 14.75 15 21 H 0.04 1.58 7.11 -2.39 -0.02 1.56 15 22 H 0.04 1.75 5.83 -2.39 -0.01 1.74 15 23 H 0.15 4.26 8.06 -2.91 -0.02 4.24 15 24 H 0.16 3.29 8.06 -2.91 -0.02 3.26 15 25 H 0.15 3.86 7.60 -2.91 -0.02 3.84 15 26 H 0.15 3.74 8.14 -2.39 -0.02 3.72 15 Total: -1.00 -66.32 248.11 6.23 -60.09 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 1.15 Total: 1.79 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 1.69 Total: -31.01 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.30 Total: -59.72 kcal Atomic # 9 Polarization: -15.74 SS G_CDS: 1.29 Total: -14.46 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.88 Total: 44.81 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -66.32 6.23 -60.09 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306907718.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.830 kcal (2) G-P(sol) polarization free energy of solvation -66.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds