Wall clock time and date at job start Mon Mar 30 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99834 * 2 1 4 4 H 1.48491 * 109.46996 * 239.99586 * 3 2 1 5 5 H 1.48497 * 109.47124 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47036 * 119.99733 * 3 2 1 7 7 C 1.37875 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99862 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47003 * 179.97438 * 9 7 2 11 11 C 1.38234 * 119.99463 * 269.97591 * 10 9 7 12 12 C 1.38326 * 119.98874 * 180.02562 * 11 10 9 13 13 Cl 1.73602 * 120.01346 * 179.97438 * 12 11 10 14 14 C 1.38373 * 119.97304 * 359.97438 * 12 11 10 15 15 C 1.38186 * 119.98904 * 0.02562 * 14 12 11 16 16 C 1.50699 * 119.99683 * 180.02562 * 15 14 12 17 17 F 1.39896 * 109.47344 * 120.02010 * 16 15 14 18 18 F 1.39903 * 109.46993 * 240.01951 * 16 15 14 19 19 C 1.38225 * 119.99399 * 90.00203 * 10 9 7 20 20 H 0.97004 * 120.00097 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47263 * 60.00016 * 9 7 2 22 22 H 1.09007 * 109.46694 * 299.99771 * 9 7 2 23 23 H 1.08005 * 120.00698 * 0.04203 * 11 10 9 24 24 H 1.08001 * 120.00753 * 180.02562 * 14 12 11 25 25 H 1.09004 * 109.47333 * 0.02562 * 16 15 14 26 26 H 1.07994 * 119.98535 * 0.24798 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2303 -3.6446 0.0005 11 6 2.6790 -4.1702 -1.1967 12 6 3.5775 -5.2219 -1.1965 13 17 4.1410 -5.8828 -2.6997 14 6 4.0271 -5.7469 0.0022 15 6 3.5779 -5.2207 1.1984 16 6 4.0678 -5.7919 2.5040 17 9 4.7156 -4.7917 3.2369 18 9 2.9802 -6.2775 3.2379 19 6 2.6793 -4.1698 1.1977 20 1 -0.4850 0.8401 -0.0004 21 1 0.6247 -2.5572 -0.8897 22 1 0.6240 -2.5567 0.8904 23 1 2.3283 -3.7595 -2.1320 24 1 4.7289 -6.5677 0.0030 25 1 4.7649 -6.6061 2.3057 26 1 2.3251 -3.7618 2.1327 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306908704.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:42 Heat of formation + Delta-G solvation = -102.923580 kcal Electronic energy + Delta-G solvation = -15010.679031 eV Core-core repulsion = 11943.056755 eV Total energy + Delta-G solvation = -3067.622275 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.85487 -46.84392 -39.10678 -36.31971 -33.76249 -31.93343 -30.88070 -27.44067 -25.97249 -23.59368 -21.73609 -20.56662 -17.26411 -17.07831 -17.02851 -16.37398 -15.85846 -14.94391 -14.73786 -14.42718 -13.80075 -13.24757 -13.21546 -12.81162 -12.70304 -12.31120 -11.82985 -11.54826 -11.43603 -11.14229 -11.00308 -10.86579 -10.58324 -10.50987 -9.75463 -9.61514 -8.60338 -8.50851 -8.18452 -6.13663 -4.18785 1.35719 1.56181 2.28840 3.28239 3.32485 3.35535 3.84318 3.89006 4.24056 4.38595 4.68090 5.08640 5.15594 5.21836 5.45754 5.52619 5.77293 5.93445 6.22124 6.42552 6.62430 6.78265 7.13830 7.39256 7.57181 7.80915 8.16451 8.85469 9.46139 10.96241 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.007468 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.940362 B = 3748.677801 C = 4781.012020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.048 3.952 10 C -0.021 4.021 11 C -0.093 4.093 12 C -0.036 4.036 13 Cl -0.082 7.082 14 C -0.108 4.108 15 C -0.165 4.165 16 C 0.318 3.682 17 F -0.199 7.199 18 F -0.201 7.201 19 C -0.078 4.078 20 H 0.264 0.736 21 H 0.035 0.965 22 H 0.035 0.965 23 H 0.136 0.864 24 H 0.130 0.870 25 H 0.115 0.885 26 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -12.113 0.424 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.011 3.989 10 C -0.022 4.022 11 C -0.111 4.111 12 C -0.062 4.062 13 Cl -0.053 7.053 14 C -0.127 4.127 15 C -0.166 4.166 16 C 0.265 3.735 17 F -0.180 7.180 18 F -0.182 7.182 19 C -0.096 4.096 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.053 0.947 23 H 0.154 0.846 24 H 0.148 0.852 25 H 0.132 0.868 26 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.384 -12.040 0.331 14.128 hybrid contribution 0.492 0.945 -0.058 1.067 sum 7.876 -11.095 0.273 13.609 Atomic orbital electron populations 1.69937 1.06062 1.27201 1.49790 1.24991 0.94900 0.99337 0.94831 0.86560 0.79548 0.82566 0.78856 1.20062 1.21131 1.20037 1.20968 0.93047 0.89633 1.52051 0.92373 1.18421 0.92318 0.89092 0.99058 1.20730 0.95846 0.94934 0.90660 1.21196 0.95922 0.94161 0.99849 1.20754 1.00662 0.98529 0.86274 1.98338 1.88637 1.85376 1.32925 1.20455 1.01309 1.00961 0.89967 1.20148 1.02516 1.00572 0.93327 1.20295 0.82906 0.87168 0.83176 1.93020 1.81522 1.64156 1.79318 1.93007 1.57615 1.88237 1.79351 1.21054 0.95156 0.93864 0.99526 0.92591 0.94727 0.94681 0.84639 0.85250 0.86817 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 13.29 55.43 0.74 -24.91 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 15 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 7 C -0.52 -14.05 9.09 -34.44 -0.31 -14.36 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.05 1.17 5.10 -29.03 -0.15 1.02 15 10 C -0.02 -0.44 5.07 -104.63 -0.53 -0.97 15 11 C -0.09 -1.69 9.49 -39.55 -0.38 -2.07 15 12 C -0.04 -0.57 6.32 -39.50 -0.25 -0.82 15 13 Cl -0.08 -1.13 28.96 -51.86 -1.50 -2.63 15 14 C -0.11 -1.55 9.46 -39.55 -0.37 -1.92 15 15 C -0.16 -2.56 5.37 -104.63 -0.56 -3.12 15 16 C 0.32 4.17 5.45 36.01 0.20 4.37 15 17 F -0.20 -3.01 17.26 2.25 0.04 -2.97 15 18 F -0.20 -2.91 17.26 2.25 0.04 -2.87 15 19 C -0.08 -1.45 9.25 -39.58 -0.37 -1.82 15 20 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 21 H 0.03 0.88 8.08 -51.93 -0.42 0.46 15 22 H 0.03 0.90 8.09 -51.92 -0.42 0.48 15 23 H 0.14 2.43 8.06 -52.48 -0.42 2.00 15 24 H 0.13 1.42 7.95 -52.49 -0.42 1.00 15 25 H 0.11 1.01 7.88 -51.93 -0.41 0.60 15 26 H 0.13 2.47 8.06 -52.49 -0.42 2.05 15 LS Contribution 261.83 15.07 3.95 3.95 Total: -1.00 -28.39 261.83 -6.63 -35.02 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: -2.05 Total: -3.62 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.82 Total: -18.08 kcal Atomic # 7 Polarization: -25.65 SS G_CDS: 0.74 Total: -24.91 kcal Atomic # 9 Polarization: -5.93 SS G_CDS: 0.08 Total: -5.85 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.39 -6.63 -35.02 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306908704.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.902 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds