Wall clock time and date at job start Mon Mar 30 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38260 * 119.98645 * 90.00071 * 10 9 7 12 12 C 1.38197 * 120.01118 * 179.97438 * 11 10 9 13 13 C 1.38373 * 119.98468 * 0.02562 * 12 11 10 14 14 Cl 1.73609 * 120.01272 * 179.97438 * 13 12 11 15 15 C 1.38333 * 119.97623 * 0.02562 * 13 12 11 16 16 C 1.50699 * 120.00414 * 180.02562 * 15 13 12 17 17 F 1.39903 * 109.47073 * 120.00203 * 16 15 13 18 18 F 1.39900 * 109.47045 * 239.99699 * 16 15 13 19 19 C 1.38228 * 119.98366 * 269.72267 * 10 9 7 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.07999 * 119.99494 * 359.97438 * 11 10 9 24 24 H 1.07991 * 120.00437 * 180.02562 * 12 11 10 25 25 H 1.09003 * 109.47307 * 0.02562 * 16 15 13 26 26 H 1.07999 * 119.99193 * 359.97438 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.6791 -4.1752 1.1849 12 6 3.5768 -5.2260 1.1809 13 6 4.0266 -5.7466 -0.0197 14 17 5.1547 -7.0662 -0.0255 15 6 3.5779 -5.2147 -1.2152 16 6 4.0669 -5.7816 -2.5230 17 9 2.9785 -6.2621 -3.2591 18 9 4.7167 -4.7796 -3.2517 19 6 2.6748 -4.1681 -1.2099 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 2.3282 -3.7685 2.1218 24 1 3.9270 -5.6406 2.1145 25 1 4.7620 -6.5982 -2.3278 26 1 2.3200 -3.7564 -2.1432 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307443723.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:31 Heat of formation + Delta-G solvation = -101.192509 kcal Electronic energy + Delta-G solvation = -15118.356240 eV Core-core repulsion = 12050.809030 eV Total energy + Delta-G solvation = -3067.547210 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 246.032 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.81970 -46.80625 -39.13318 -36.53773 -33.63545 -31.89664 -31.17216 -27.34078 -25.91285 -23.53531 -21.90152 -20.49568 -17.31141 -17.13509 -17.05959 -16.39572 -16.03266 -14.90676 -14.67376 -13.92086 -13.78678 -13.27802 -13.18555 -13.11061 -12.72815 -12.41768 -11.89653 -11.74308 -11.48892 -11.21745 -11.07533 -10.70987 -10.64803 -10.30396 -9.74562 -9.57997 -8.83096 -8.52390 -8.08861 -6.14872 -4.19947 1.32181 1.56856 2.11650 3.25747 3.32304 3.35801 3.84004 3.90967 4.27644 4.37708 4.66530 5.11516 5.17609 5.20902 5.49434 5.62058 5.77265 5.97427 6.13079 6.39013 6.67462 6.81297 7.14680 7.38833 7.57310 7.79954 8.15608 8.84754 9.45071 10.94967 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.028055 B = 0.006334 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.793918 B = 4419.719986 C = 4798.147577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.046 3.954 10 C -0.027 4.027 11 C -0.092 4.092 12 C -0.112 4.112 13 C -0.033 4.033 14 Cl -0.082 7.082 15 C -0.165 4.165 16 C 0.310 3.690 17 F -0.199 7.199 18 F -0.197 7.197 19 C -0.072 4.072 20 H 0.264 0.736 21 H 0.035 0.965 22 H 0.034 0.966 23 H 0.136 0.864 24 H 0.132 0.868 25 H 0.117 0.883 26 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.469 -12.080 -0.338 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.009 3.991 10 C -0.027 4.027 11 C -0.110 4.110 12 C -0.130 4.130 13 C -0.059 4.059 14 Cl -0.054 7.054 15 C -0.167 4.167 16 C 0.256 3.744 17 F -0.180 7.180 18 F -0.178 7.178 19 C -0.090 4.090 20 H 0.073 0.927 21 H 0.053 0.947 22 H 0.052 0.948 23 H 0.153 0.847 24 H 0.150 0.850 25 H 0.134 0.866 26 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.403 -12.068 -0.378 14.163 hybrid contribution 0.531 0.892 -0.117 1.044 sum 7.934 -11.177 -0.495 13.715 Atomic orbital electron populations 1.69949 1.06065 1.27085 1.49866 1.25001 0.94903 0.99361 0.94852 0.86500 0.79807 0.82895 0.78329 1.20457 1.21075 1.19724 1.21007 0.93078 0.89615 1.51926 0.92323 1.18434 0.92392 0.89217 0.99037 1.20885 0.95672 0.94806 0.91313 1.21263 0.95978 0.94539 0.99232 1.20958 0.98526 0.97561 0.95971 1.20422 0.97439 0.93636 0.94425 1.98325 1.60980 1.47545 1.98513 1.20019 1.03011 1.01035 0.92618 1.20459 0.83172 0.87588 0.83143 1.93001 1.57464 1.88412 1.79166 1.93014 1.81423 1.63967 1.79443 1.20940 0.94854 0.93470 0.99754 0.92652 0.94697 0.94797 0.84656 0.85012 0.86568 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.49 13.29 55.43 0.74 -24.75 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 7 C -0.52 -13.91 9.09 -34.44 -0.31 -14.23 15 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 9 C 0.05 1.11 5.10 -29.03 -0.15 0.97 15 10 C -0.03 -0.54 5.07 -104.62 -0.53 -1.07 15 11 C -0.09 -1.59 9.70 -39.59 -0.38 -1.98 15 12 C -0.11 -1.67 9.83 -39.55 -0.39 -2.06 15 13 C -0.03 -0.50 6.32 -39.50 -0.25 -0.75 15 14 Cl -0.08 -1.03 27.01 -51.86 -1.40 -2.43 15 15 C -0.17 -2.75 5.37 -104.59 -0.56 -3.31 15 16 C 0.31 4.63 5.35 36.01 0.19 4.82 15 17 F -0.20 -3.13 17.25 2.25 0.04 -3.10 15 18 F -0.20 -3.23 17.26 2.25 0.04 -3.19 15 19 C -0.07 -1.36 9.25 -39.59 -0.37 -1.73 15 20 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 21 H 0.03 0.87 8.09 -51.93 -0.42 0.45 15 22 H 0.03 0.87 8.08 -51.93 -0.42 0.45 15 23 H 0.14 2.18 8.06 -52.49 -0.42 1.76 15 24 H 0.13 1.60 8.06 -52.49 -0.42 1.18 15 25 H 0.12 1.44 6.17 -51.93 -0.32 1.12 15 26 H 0.13 2.57 8.06 -52.49 -0.42 2.15 15 LS Contribution 258.77 15.07 3.90 3.90 Total: -1.00 -27.91 258.77 -6.52 -34.44 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: -1.97 Total: -3.10 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -2.85 Total: -17.76 kcal Atomic # 7 Polarization: -25.49 SS G_CDS: 0.74 Total: -24.75 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.08 Total: -6.29 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -1.40 Total: -2.43 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.91 -6.52 -34.44 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307443723.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.756 kcal (2) G-P(sol) polarization free energy of solvation -27.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds