Wall clock time and date at job start Mon Mar 30 2020 05:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47298 * 270.00474 * 3 2 1 5 5 H 1.48507 * 109.46864 * 30.00066 * 3 2 1 6 6 H 1.48502 * 109.47494 * 149.99938 * 3 2 1 7 7 C 1.37882 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47057 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46597 * 179.97438 * 11 10 9 13 13 C 1.40451 * 119.99673 * 179.97438 * 12 11 10 14 14 C 1.34062 * 122.81161 * 0.02562 * 13 12 11 15 15 S 1.76183 * 107.95883 * 179.97438 * 14 13 12 16 16 C 1.70958 * 90.36104 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 124.86624 * 179.97438 * 16 15 14 18 18 N 1.29227 * 110.26345 * 0.02562 * 16 15 14 19 19 H 0.97001 * 120.00312 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47211 * 60.00273 * 9 7 2 21 21 H 1.09003 * 109.46993 * 300.00202 * 9 7 2 22 22 H 1.09003 * 109.46974 * 59.99930 * 10 9 7 23 23 H 1.09003 * 109.47148 * 299.99910 * 10 9 7 24 24 H 1.09001 * 109.46680 * 59.99993 * 11 10 9 25 25 H 1.08989 * 109.47210 * 299.99868 * 11 10 9 26 26 H 0.96992 * 120.00829 * 0.02562 * 12 11 10 27 27 H 1.07995 * 126.02609 * 359.95996 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9872 0.0001 12 7 2.4322 -6.1006 -0.0005 13 6 1.9640 -7.4248 0.0005 14 6 0.6596 -7.7341 0.0015 15 16 0.5177 -9.4903 0.0017 16 6 2.2208 -9.6386 0.0012 17 17 3.0859 -11.1438 0.0017 18 7 2.7719 -8.4698 0.0014 19 1 -0.4851 0.8400 0.0004 20 1 0.6239 -2.5568 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 2.8718 -3.6044 0.8895 23 1 2.8718 -3.6044 -0.8905 24 1 0.8532 -5.0451 -0.8897 25 1 0.8538 -5.0446 0.8902 26 1 3.3858 -5.9235 -0.0008 27 1 -0.1600 -7.0309 0.0022 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308364914.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:08 Heat of formation + Delta-G solvation = 32.011986 kcal Electronic energy + Delta-G solvation = -12696.494162 eV Core-core repulsion = 10220.856270 eV Total energy + Delta-G solvation = -2475.637892 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.029 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.01958 -37.23344 -35.92403 -33.42718 -31.33933 -28.93788 -26.82942 -24.91283 -22.77598 -20.60560 -20.01422 -18.74757 -16.57375 -16.12912 -15.59015 -15.43347 -14.53128 -14.51186 -14.15376 -13.73016 -12.53996 -12.33406 -11.98910 -11.77309 -11.73128 -11.63405 -10.94879 -10.76471 -10.60581 -10.06872 -9.94463 -9.67900 -9.53318 -9.52717 -9.17873 -8.41098 -7.54532 -6.06116 -4.08843 0.52806 0.65913 1.58888 1.70020 2.85784 3.28895 3.35283 3.38064 3.45643 4.41710 4.89150 5.30117 5.32459 5.53824 5.66252 5.68708 6.03312 6.52977 6.53500 6.86402 6.95408 7.50818 7.57587 7.69667 7.92074 7.96849 8.34147 8.97466 9.55656 11.05182 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.072911 B = 0.003431 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.936454 B = 8159.189362 C = 8517.377423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.132 3.868 12 N -0.719 5.719 13 C 0.360 3.640 14 C -0.349 4.349 15 S 0.189 5.811 16 C 0.093 3.907 17 Cl 0.021 6.979 18 N -0.492 5.492 19 H 0.261 0.739 20 H 0.019 0.981 21 H 0.019 0.981 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.404 0.596 27 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.224 -20.513 0.006 20.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.158 4.158 11 C 0.008 3.992 12 N -0.353 5.353 13 C 0.132 3.868 14 C -0.496 4.496 15 S 0.433 5.567 16 C -0.211 4.211 17 Cl 0.048 6.952 18 N -0.215 5.215 19 H 0.071 0.929 20 H 0.037 0.963 21 H 0.037 0.963 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.239 0.761 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 0.808 -21.039 0.011 21.054 hybrid contribution 1.307 1.786 -0.010 2.213 sum 2.116 -19.253 0.001 19.369 Atomic orbital electron populations 1.69952 1.06056 1.26733 1.50602 1.25023 0.94879 0.99340 0.95213 0.86569 0.79824 0.83330 0.78134 1.20631 1.21174 1.19876 1.21202 0.93056 0.90905 1.50929 0.92622 1.19027 0.93800 0.90866 0.97555 1.21866 0.99859 0.92898 1.01187 1.21644 0.91755 0.84957 1.00823 1.44634 1.09543 0.99309 1.81822 1.16945 0.87133 0.85893 0.96799 1.25924 0.99942 0.97363 1.26327 1.83760 1.01232 1.02125 1.69620 1.26545 0.95218 0.91861 1.07490 1.98423 1.76877 1.23269 1.96615 1.65311 1.39441 0.97198 1.19599 0.92918 0.96287 0.96286 0.92586 0.92582 0.92341 0.92337 0.76053 0.80107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 15 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 15 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 15 9 C 0.03 0.62 4.97 -27.88 -0.14 0.48 15 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.46 15 11 C 0.13 2.13 5.19 -4.04 -0.02 2.11 15 12 N -0.72 -10.92 5.79 -61.42 -0.36 -11.28 15 13 C 0.36 5.35 7.72 -155.65 -1.20 4.15 15 14 C -0.35 -4.53 10.52 29.26 0.31 -4.22 15 15 S 0.19 1.97 23.22 -107.50 -2.50 -0.52 15 16 C 0.09 1.15 8.03 51.67 0.41 1.57 15 17 Cl 0.02 0.21 29.33 -51.86 -1.52 -1.31 15 18 N -0.49 -7.28 10.57 -11.76 -0.12 -7.41 15 19 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 20 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 21 H 0.02 0.49 8.14 -51.93 -0.42 0.07 15 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 15 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 25 H 0.06 0.94 8.14 -51.94 -0.42 0.52 15 26 H 0.40 5.91 8.60 -40.82 -0.35 5.56 15 27 H 0.18 2.17 7.55 -52.49 -0.40 1.77 15 LS Contribution 270.37 15.07 4.07 4.07 Total: -1.00 -29.42 270.37 -8.72 -38.15 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -2.82 Total: -0.79 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.19 Total: -11.63 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.26 Total: -44.32 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.50 Total: -0.52 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -1.52 Total: -1.31 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.42 -8.72 -38.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308364914.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.159 kcal (2) G-P(sol) polarization free energy of solvation -29.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds