Wall clock time and date at job start Mon Mar 30 2020 05:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00321 * 2 1 4 4 H 1.48496 * 109.47298 * 270.00474 * 3 2 1 5 5 H 1.48507 * 109.46864 * 30.00066 * 3 2 1 6 6 H 1.48502 * 109.47494 * 149.99938 * 3 2 1 7 7 C 1.37882 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99885 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47207 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47057 * 179.97438 * 10 9 7 12 12 N 1.46501 * 109.46597 * 179.97438 * 11 10 9 13 13 C 1.40451 * 119.99673 * 179.97438 * 12 11 10 14 14 C 1.34062 * 122.81161 * 0.02562 * 13 12 11 15 15 S 1.76183 * 107.95883 * 179.97438 * 14 13 12 16 16 C 1.70958 * 90.36104 * 0.02562 * 15 14 13 17 17 Cl 1.73599 * 124.86624 * 179.97438 * 16 15 14 18 18 N 1.29227 * 110.26345 * 0.02562 * 16 15 14 19 19 H 0.97001 * 120.00312 * 359.97438 * 1 2 3 20 20 H 1.09003 * 109.47211 * 60.00273 * 9 7 2 21 21 H 1.09003 * 109.46993 * 300.00202 * 9 7 2 22 22 H 1.09003 * 109.46974 * 59.99930 * 10 9 7 23 23 H 1.09003 * 109.47148 * 299.99910 * 10 9 7 24 24 H 1.09001 * 109.46680 * 59.99993 * 11 10 9 25 25 H 1.08989 * 109.47210 * 299.99868 * 11 10 9 26 26 H 0.96992 * 120.00829 * 0.02562 * 12 11 10 27 27 H 1.07995 * 126.02609 * 359.95996 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 6 1.4801 -4.9872 0.0001 12 7 2.4322 -6.1006 -0.0005 13 6 1.9640 -7.4248 0.0005 14 6 0.6596 -7.7341 0.0015 15 16 0.5177 -9.4903 0.0017 16 6 2.2208 -9.6386 0.0012 17 17 3.0859 -11.1438 0.0017 18 7 2.7719 -8.4698 0.0014 19 1 -0.4851 0.8400 0.0004 20 1 0.6239 -2.5568 -0.8903 21 1 0.6246 -2.5571 0.8897 22 1 2.8718 -3.6044 0.8895 23 1 2.8718 -3.6044 -0.8905 24 1 0.8532 -5.0451 -0.8897 25 1 0.8538 -5.0446 0.8902 26 1 3.3858 -5.9235 -0.0008 27 1 -0.1600 -7.0309 0.0022 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308364914.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:08 Heat of formation + Delta-G solvation = 13.941576 kcal Electronic energy + Delta-G solvation = -12697.277754 eV Core-core repulsion = 10220.856270 eV Total energy + Delta-G solvation = -2476.421484 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 246.029 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.04374 -38.12366 -37.27698 -35.27976 -33.05730 -30.12559 -28.40753 -26.23568 -24.37299 -22.22777 -21.08379 -19.81099 -18.50468 -17.34297 -16.71013 -16.60203 -16.41142 -15.84602 -15.44252 -14.71498 -14.24368 -13.92461 -13.73115 -13.03518 -12.80422 -12.72730 -12.59164 -12.45111 -12.34568 -11.73150 -11.48446 -11.20461 -10.90413 -10.83527 -10.55118 -10.48224 -8.61234 -8.20544 -6.30842 -0.43351 -0.23335 0.62813 0.77904 1.41211 1.41699 1.52774 1.80141 2.30530 2.43171 3.13340 3.85656 4.16955 4.23478 4.29338 4.53840 4.66967 4.96566 5.00701 5.15483 5.50243 5.72123 5.75352 5.84137 6.23163 6.42177 6.85403 6.86155 7.38245 8.91078 Molecular weight = 246.03amu Principal moments of inertia in cm(-1) A = 0.072911 B = 0.003431 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 383.936454 B = 8159.189362 C = 8517.377423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.027 3.973 10 C -0.104 4.104 11 C 0.149 3.851 12 N -0.723 5.723 13 C 0.339 3.661 14 C -0.361 4.361 15 S 0.268 5.732 16 C 0.075 3.925 17 Cl 0.036 6.964 18 N -0.522 5.522 19 H 0.264 0.736 20 H -0.001 1.001 21 H -0.001 1.001 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.405 0.595 27 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 -21.359 0.000 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.142 4.142 11 C 0.025 3.975 12 N -0.359 5.359 13 C 0.112 3.888 14 C -0.507 4.507 15 S 0.512 5.488 16 C -0.227 4.227 17 Cl 0.064 6.936 18 N -0.246 5.246 19 H 0.072 0.928 20 H 0.017 0.983 21 H 0.017 0.983 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.240 0.760 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 1.127 -21.936 0.005 21.965 hybrid contribution 1.144 1.919 -0.009 2.234 sum 2.270 -20.017 -0.004 20.146 Atomic orbital electron populations 1.70074 1.07645 1.27774 1.51560 1.25940 0.95787 1.03244 0.94802 0.85475 0.78654 0.78649 0.78435 1.19862 1.20758 1.18927 1.21675 0.93557 0.92372 1.50611 0.92254 1.18914 0.94267 0.92333 0.95514 1.21572 0.98662 0.92623 1.01377 1.21279 0.91334 0.83956 1.00969 1.44399 1.09246 0.99467 1.82803 1.17061 0.87864 0.85698 0.98182 1.26276 0.99643 0.99766 1.25005 1.83483 0.98725 0.99153 1.67411 1.26905 0.96779 0.91951 1.07110 1.98427 1.76832 1.21845 1.96490 1.65292 1.40394 0.97815 1.21125 0.92752 0.98306 0.98305 0.92366 0.92338 0.92243 0.92241 0.75988 0.79460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 13.29 21.45 0.28 -55.23 15 2 C 0.00 0.02 5.46 84.66 0.46 0.48 15 3 Si 0.96 43.71 29.54 68.60 2.03 45.73 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 15 6 H -0.26 -11.54 7.11 99.48 0.71 -10.83 15 7 C -0.54 -30.29 9.11 25.60 0.23 -30.05 15 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 15 9 C 0.03 1.38 4.97 29.85 0.15 1.53 15 10 C -0.10 -4.02 5.27 30.60 0.16 -3.86 15 11 C 0.15 4.77 5.19 86.38 0.45 5.21 15 12 N -0.72 -21.60 5.79 -348.23 -2.02 -23.61 15 13 C 0.34 9.76 7.72 131.49 1.01 10.78 15 14 C -0.36 -8.79 10.52 66.87 0.70 -8.09 15 15 S 0.27 4.94 23.22 -56.49 -1.31 3.63 15 16 C 0.08 1.74 8.03 130.63 1.05 2.79 15 17 Cl 0.04 0.68 29.33 -2.72 -0.08 0.60 15 18 N -0.52 -14.92 10.57 -191.13 -2.02 -16.94 15 19 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 20 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 15 21 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 15 22 H 0.06 2.20 8.14 -2.39 -0.02 2.18 15 23 H 0.06 2.21 8.14 -2.39 -0.02 2.19 15 24 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 15 26 H 0.40 11.70 8.60 -92.71 -0.80 10.90 15 27 H 0.19 4.21 7.55 -2.91 -0.02 4.19 15 Total: -1.00 -62.29 270.37 1.50 -60.79 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.39 Total: 6.24 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: 4.22 Total: -21.21 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -3.75 Total: -95.79 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.31 Total: 3.63 kcal Atomic # 17 Polarization: 0.68 SS G_CDS: -0.08 Total: 0.60 kcal Total: -62.29 1.50 -60.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308364914.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.735 kcal (2) G-P(sol) polarization free energy of solvation -62.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds