Wall clock time and date at job start Mon Mar 30 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99669 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47162 * 299.99685 * 3 2 1 6 6 H 1.48501 * 109.47494 * 59.99663 * 3 2 1 7 7 C 1.37874 * 119.99835 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99766 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.35972 * 116.99782 * 180.02562 * 10 9 7 12 12 C 1.38326 * 120.07098 * 359.72291 * 11 10 9 13 13 C 1.38693 * 120.61472 * 179.72732 * 12 11 10 14 14 C 1.37663 * 120.40741 * 0.57192 * 13 12 11 15 15 C 1.39889 * 119.71431 * 359.70412 * 14 13 12 16 16 C 1.46622 * 120.99976 * 180.02562 * 15 14 13 17 17 C 1.35701 * 118.18920 * 179.97438 * 16 15 14 18 18 C 1.41193 * 119.78837 * 0.02562 * 17 16 15 19 19 O 1.21773 * 119.16645 * 180.02562 * 18 17 16 20 20 O 1.34170 * 121.66385 * 359.97438 * 18 17 16 21 21 C 1.35075 * 121.48163 * 0.03935 * 20 18 17 22 22 H 0.96992 * 120.00038 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 24 24 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 25 25 H 1.08000 * 119.68896 * 0.02562 * 12 11 10 26 26 H 1.08007 * 119.80031 * 180.27997 * 13 12 11 27 27 H 1.08006 * 120.14290 * 179.68334 * 14 13 12 28 28 H 1.08000 * 120.90816 * 359.96065 * 16 15 14 29 29 H 1.07991 * 120.10730 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0017 11 6 1.6601 -4.8418 0.0014 12 6 0.2890 -5.0247 0.0056 13 6 -0.2533 -6.3013 -0.0004 14 6 0.5670 -7.4068 0.0011 15 6 1.9559 -7.2396 0.0025 16 6 2.8558 -8.3972 0.0035 17 6 4.1935 -8.1692 0.0043 18 6 4.6791 -6.8434 0.0047 19 8 5.8817 -6.6519 0.0049 20 8 3.8490 -5.7893 0.0037 21 6 2.5076 -5.9478 0.0032 22 1 -0.4850 0.8400 -0.0004 23 1 0.6248 -2.5571 -0.8897 24 1 0.6241 -2.5568 0.8903 25 1 -0.3653 -4.1655 0.0089 26 1 -1.3258 -6.4289 -0.0015 27 1 0.1402 -8.3989 0.0016 28 1 2.4647 -9.4039 0.0039 29 1 4.8845 -8.9991 0.0047 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382742709.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:19 Heat of formation + Delta-G solvation = -69.190163 kcal Electronic energy + Delta-G solvation = -16810.994290 eV Core-core repulsion = 13858.355170 eV Total energy + Delta-G solvation = -2952.639119 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.072 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.64185 -39.23851 -37.43256 -36.75026 -34.15137 -32.96596 -30.06847 -29.67529 -27.55175 -24.63794 -24.06355 -23.16984 -21.78064 -19.31568 -18.22485 -17.41737 -16.55381 -16.46956 -16.19156 -15.12403 -14.98759 -14.75090 -14.65803 -14.36712 -13.99843 -12.94249 -12.86847 -12.71896 -12.10219 -11.99786 -11.64193 -11.17517 -11.16445 -11.01968 -10.69784 -10.31171 -10.10681 -10.08782 -9.36733 -8.66548 -8.39537 -7.68668 -6.31172 -4.34484 0.27985 1.20701 1.75430 2.65818 2.97208 3.21424 3.28349 3.35064 3.77670 3.85455 4.21963 4.30577 4.41461 4.73463 4.97909 5.06815 5.11291 5.29969 5.31336 5.60703 5.65822 5.86097 6.07363 6.29199 6.46165 6.66453 6.74225 7.00256 7.33154 7.58884 7.69110 7.85564 8.27121 8.77492 9.31217 10.80123 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.028682 B = 0.005936 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.988982 B = 4715.627256 C = 5676.471564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.189 3.811 10 O -0.300 6.300 11 C 0.147 3.853 12 C -0.170 4.170 13 C -0.094 4.094 14 C -0.119 4.119 15 C -0.128 4.128 16 C 0.001 3.999 17 C -0.249 4.249 18 C 0.502 3.498 19 O -0.476 6.476 20 O -0.250 6.250 21 C 0.098 3.902 22 H 0.267 0.733 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.150 0.850 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.152 0.848 29 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.895 -16.451 0.004 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.562 4.562 8 H 0.091 0.909 9 C 0.117 3.883 10 O -0.212 6.212 11 C 0.098 3.902 12 C -0.189 4.189 13 C -0.112 4.112 14 C -0.137 4.137 15 C -0.129 4.129 16 C -0.017 4.017 17 C -0.268 4.268 18 C 0.351 3.649 19 O -0.365 6.365 20 O -0.161 6.161 21 C 0.053 3.947 22 H 0.077 0.923 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.168 0.832 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.170 0.830 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.185 -15.940 0.005 15.984 hybrid contribution -0.013 0.748 -0.001 0.748 sum -1.198 -15.192 0.005 15.239 Atomic orbital electron populations 1.69944 1.06121 1.27653 1.49625 1.24925 0.95079 0.99589 0.94515 0.86168 0.80121 0.81847 0.77796 1.19227 1.20603 1.20609 1.21007 0.94521 0.88452 1.52206 0.90851 1.20810 0.88689 0.81698 0.97106 1.86297 1.38706 1.10866 1.85336 1.18502 0.90320 0.85770 0.95622 1.21510 0.93130 0.99501 1.04709 1.20936 1.00170 0.91408 0.98737 1.20836 0.90495 0.99357 1.03018 1.18835 0.95009 0.90728 1.08340 1.22803 0.92407 0.98278 0.88232 1.22633 0.97212 0.97110 1.09841 1.19278 0.85889 0.84099 0.75645 1.90948 1.12200 1.86032 1.47334 1.83656 1.15878 1.39682 1.76905 1.18431 0.79314 0.92066 1.04934 0.92309 0.95652 0.95663 0.83196 0.84945 0.84861 0.83032 0.82235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.29 13.29 55.43 0.74 -24.56 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 3 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 15 7 C -0.52 -14.88 9.43 -34.44 -0.32 -15.21 15 8 H 0.07 2.11 7.81 -52.48 -0.41 1.70 15 9 C 0.19 4.87 4.49 36.01 0.16 5.03 15 10 O -0.30 -7.28 9.93 -33.57 -0.33 -7.62 15 11 C 0.15 2.90 6.70 -39.14 -0.26 2.64 15 12 C -0.17 -2.80 9.03 -39.38 -0.36 -3.15 15 13 C -0.09 -1.17 10.02 -39.62 -0.40 -1.57 15 14 C -0.12 -1.32 9.83 -39.17 -0.39 -1.71 15 15 C -0.13 -1.72 5.87 -105.06 -0.62 -2.33 15 16 C 0.00 0.01 10.13 -37.11 -0.38 -0.36 15 17 C -0.25 -3.01 9.94 -39.37 -0.39 -3.40 15 18 C 0.50 8.76 7.89 31.85 0.25 9.01 15 19 O -0.48 -9.64 17.91 -19.58 -0.35 -9.99 15 20 O -0.25 -4.98 9.62 -25.98 -0.25 -5.23 15 21 C 0.10 1.75 6.77 -38.33 -0.26 1.49 15 22 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 23 H 0.03 0.66 7.67 -51.93 -0.40 0.26 15 24 H 0.03 0.66 7.65 -51.93 -0.40 0.26 15 25 H 0.15 2.55 6.26 -52.49 -0.33 2.22 15 26 H 0.13 1.23 8.06 -52.48 -0.42 0.81 15 27 H 0.13 0.97 8.06 -52.48 -0.42 0.55 15 28 H 0.15 0.85 8.06 -52.49 -0.42 0.42 15 29 H 0.16 1.46 8.06 -52.49 -0.42 1.04 15 LS Contribution 267.10 15.07 4.03 4.03 Total: -1.00 -32.28 267.10 -6.61 -38.88 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: -2.36 Total: -3.80 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.05 Total: -7.96 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.74 Total: -24.56 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.93 Total: -22.84 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.28 -6.61 -38.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382742709.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.309 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds